prot_H-elongata_contig169781.4331.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig169781.4331.1
Unique Nameprot_H-elongata_contig169781.4331.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
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BLAST of mRNA_H-elongata_contig169781.4331.1 vs. uniprot
Match: D7FQA7_ECTSI (Hypothetical leucine rich repeat and MORN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 1.660e-34
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0 
Query:    1 LEAEVEQFYADDPGNTRELFLQAVARLKTITRDDWFMIRNYDQPPPVIAALMSAACTLMLVKDTWKSARNLVGSSVQNME 80
            LEAEVEQFY DDPG TRELF +AV RLKTI   +WFM+RNYD+PPPV+A LMSA CTL+LV+D+WKSARN+VGSSVQNME
Sbjct: 3190 LEAEVEQFYTDDPGRTRELFHEAVERLKTIEGSEWFMVRNYDKPPPVLATLMSAVCTLVLVRDSWKSARNMVGSSVQNME 3269
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BLAST of mRNA_H-elongata_contig169781.4331.1 vs. uniprot
Match: A0A7S3ZXM5_9STRA (Hypothetical protein (Fragment) n=6 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXM5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.630e-10
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:    7 QFYADDPGNTRELFLQAVARLKTITRDDWFMIRNYDQPPPVIAALMSAACTLMLVKDTWKSARNLVGSSVQNME 80
            +F+ DDP  TR+ F  AV +++ +   D+F+IR + +PPP++  ++ AAC L   ++TWK+A+ L+ SS  N +
Sbjct: 3709 KFWDDDPHKTRDAFAAAVRKIQALELRDFFVIRYFPEPPPLLEKVLRAACILTSEQETWKAAQLLLSSSQINAD 3782
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169781.4331.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQA7_ECTSI1.660e-3477.50Hypothetical leucine rich repeat and MORN domain-c... [more]
A0A7S3ZXM5_9STRA3.630e-1037.84Hypothetical protein (Fragment) n=6 Tax=Pelagomona... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.920.60coord: 3..79
e-value: 1.2E-8
score: 36.5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..81
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..61
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169781contigH-elongata_contig169781:1037..1279 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169781.4331.1mRNA_H-elongata_contig169781.4331.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig169781 1037..1279 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig169781.4331.1 ID=prot_H-elongata_contig169781.4331.1|Name=mRNA_H-elongata_contig169781.4331.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
LEAEVEQFYADDPGNTRELFLQAVARLKTITRDDWFMIRNYDQPPPVIAA
LMSAACTLMLVKDTWKSARNLVGSSVQNMEV
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