prot_H-elongata_contig169386.4307.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig169386.4307.1
Unique Nameprot_H-elongata_contig169386.4307.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length84
Homology
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BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.320e-40
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0 
Query:    1 MEGMQIKKTYGFWTWQVFGFIFVQNFVRLLVRKGGDLKKLTMEEINWDHVVTEPEHLKELKAYCCEECGYTLYPARG 77
            M+G+ IKKTYGFWTWQVFGFIFVQ+FVR LVRKGG LKK +M E+ WDH+VTEPEHL ELKAYCCEECGYTL+PARG
Sbjct:  185 MDGLVIKKTYGFWTWQVFGFIFVQHFVRNLVRKGGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARG 261
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BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.760e-12
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 0 
Query:   20 FIFVQNFVRLLVRKGGDLKKLTMEEINWDHVVTEPEHLKELKAYCCEECGYTLYPAR 76
            F+ VQ F+   VRKG  ++++   E+ W+++VTE EH+KEL AY CE+CGYTL+PAR
Sbjct:   12 FVIVQFFITW-VRKGFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPAR 67
[Close]
BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Match: A0A7S2D095_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D095_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 5.220e-5
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 0 
Query:    8 KTYGFWTWQVFGFIFVQNFVRLL-VRKGGDLKKLTMEEINWDHVVTEPEHLKELKAYCCEECGYTLYPARG 77
            KT   WT    G IF    V+++ +   G+L+    EE N+ ++        EL  +CCE CGYT++PARG
Sbjct:  121 KTSFLWT----GIIFTLLIVKIVRMAAAGNLRAAFFEEPNYKYIARSDAEEAELHEFCCETCGYTMFPARG 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169386.4307.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMS9_ECTSI7.320e-4081.82Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA2.760e-1252.63Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2D095_9EUKA5.220e-536.62Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169386contigH-elongata_contig169386:240..963 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169386.4307.1mRNA_H-elongata_contig169386.4307.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig169386 240..963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig169386.4307.1 ID=prot_H-elongata_contig169386.4307.1|Name=mRNA_H-elongata_contig169386.4307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MEGMQIKKTYGFWTWQVFGFIFVQNFVRLLVRKGGDLKKLTMEEINWDHV
VTEPEHLKELKAYCCEECGYTLYPARGINNNGA*
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