prot_H-elongata_contig169266.4303.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig169266.4303.1
Unique Nameprot_H-elongata_contig169266.4303.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length237
Homology
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.280e-38
Identity = 91/234 (38.89%), Postives = 124/234 (52.99%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSG-IWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPE-GLKIGVIRTDGGGDWHGQFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVALLRGVMEGKSDR-----LWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPF 230
            H   GH  E++ + T +  GVQL+G    PC+ CS S+ +   +  ST+ RA  +  RLF++  G     S+  N + ++  DD TR+  V FLK KSDA  A    ++DY A     ++ V RTDGGG++ GQF       GIK+E TPP TP YNGV ERALGLL D  +A      E   D      LWAEA++ AC   N + +       SP EL++G  P   +  PF
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.050e-37
Identity = 87/244 (35.66%), Postives = 125/244 (51.23%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F D  G     S+    + ++  DDFTR   + FL+ KSDA +A R  ++   A  G+   + ++R+D GG + G  F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:   38 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCR 279          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.840e-37
Identity = 83/226 (36.73%), Postives = 126/226 (55.75%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYG 219
            H +  H  E + R T +  G++L+G    C  CS S+  +  + + T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK KSDA +A R  ++   A +G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N +   +     SPYE+W+G
Sbjct:  576 HNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHG 800          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.820e-37
Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYG 219
            H + GH  E + R T +  G++L+G    C  CS  +  R A+ + T N +D++  R+F++  G     S+    + M+  DDFTR   + FL+ KSDA +A R  +++  A +G+   I ++R+D GG++ G +F S   EL IK+E TP ++P +NGV ER LGL+ +  +A       L   V   K+DRLWAEAM +AC+  N +   +     SPYE+WYG
Sbjct:  397 HNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYG 621          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 8.550e-37
Identity = 89/245 (36.33%), Postives = 127/245 (51.84%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFA---PEGLKIGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK +SDA  A R  ++   A   P  ++I  +R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  258 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCR 499          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.070e-36
Identity = 88/244 (36.07%), Postives = 128/244 (52.46%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FL+ KSDA +A R  ++   A  G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  191 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCR 432          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.980e-36
Identity = 86/244 (35.25%), Postives = 129/244 (52.87%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H +  H  + + R T +  G +L G    C  CS ++  +  +   T++R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK KSDA  A R  ++   A +G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  670 HNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCR 911          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.000e-36
Identity = 86/244 (35.25%), Postives = 129/244 (52.87%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H +  H  + + R T +  G +L G    C  CS ++  +  +   T++R+D++  R+F+D  G     S+    + M+  DDFTR   + FLK KSDA  A R  ++   A +G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +     SPYE+WYG  P      PF    Y R
Sbjct:  377 HNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCR 618          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.460e-36
Identity = 87/244 (35.66%), Postives = 127/244 (52.05%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK--IGVIRTDGGGDWHG-QFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H +  H  E + R T +  G +L G    C  CS S+  R  +   T+ R+D++  R+F+D  G     S+    + M+  DDFTR   + FL+ KSDA +A R  ++   A  G+   + ++R+D GG++ G +F S   EL IK+E TP Y+P YNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N +   +      PYE+WYG  P      PF    Y R
Sbjct:  136 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCR 377          
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.060e-34
Identity = 86/243 (35.39%), Postives = 129/243 (53.09%), Query Frame = 0
Query:    4 HQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNSTENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKSDATNALRDIISDYFAPEGLK-IGVIRTDGGGDW-HGQFLSFLGELGIKRESTPPYTPLYNGVVERALGLLRDKTVA-------LLRGVMEGKSDRLWAEAMAYACDIWNRSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR 237
            H   GH  E + R T +  G  L G  + C+ CS ++     +PN T  RA ++ QR F++ SG     SL    + ++  DD+TR+  V FLK KSDA  A    + +  A      + V+R+D GG++  G+F     +  IK+E TP ++P YNGV ERALGL++D  +A       L  G    +S  LWAEA+A++C+  N +++ S     SPYE+W+G  P     PP  T  +L+
Sbjct:  312 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLK 547          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169266.4303.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE3.280e-3838.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE1.050e-3735.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE2.840e-3736.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE5.820e-3736.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE8.550e-3736.33Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRL9_9PHAE1.070e-3636.07Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JBA7_9PHAE1.980e-3635.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.000e-3635.25Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE2.460e-3635.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE1.060e-3435.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 57..171
e-value: 6.1E-12
score: 45.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 43..221
score: 19.224
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 47..230
e-value: 5.0E-26
score: 93.1
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..222
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 4..222
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 59..225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169266contigH-elongata_contig169266:317..1027 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169266.4303.1mRNA_H-elongata_contig169266.4303.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig169266 314..1027 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig169266.4303.1 ID=prot_H-elongata_contig169266.4303.1|Name=mRNA_H-elongata_contig169266.4303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
MKVHQVLGHPAEQITRNTVRMAGVQLSGIWQPCVHCSESRVRRYAVPNST
ENRADRRAQRLFIDFSGPFHETSLRENRFVMLCIDDFTRFKMVRFLKQKS
DATNALRDIISDYFAPEGLKIGVIRTDGGGDWHGQFLSFLGELGIKREST
PPYTPLYNGVVERALGLLRDKTVALLRGVMEGKSDRLWAEAMAYACDIWN
RSTSVSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf