prot_H-elongata_contig168604.4275.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig168604.4275.1
Unique Nameprot_H-elongata_contig168604.4275.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length96
Homology
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BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI000905C858 (zinc finger BED domain-containing protein 1 n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000905C858)

HSP 1 Score: 52.4 bits (124), Expect = 9.630e-6
Identity = 27/95 (28.42%), Postives = 52/95 (54.74%), Query Frame = 0 
Query:    2 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 96
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   HTG+   +     +      ++++    TDNG N+V  ++
Sbjct:  198 EKVAAELRYVKHVAATSDLWSSCTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHTGEMVGQGLRAMLSAWDISEEDLVAITTDNGPNIVKAVK 292
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI0019535341 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Oreochromis aureus TaxID=47969 RepID=UPI0019535341)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 27/95 (28.42%), Postives = 52/95 (54.74%), Query Frame = 0 
Query:    2 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 96
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   HTG+   +     +      ++++    TDNG N+V  ++
Sbjct:   30 EKVAAELRYVKHVAATSDLWSSRTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHTGEMVGQGLRVMLSAWDISEEDLVAITTDNGPNIVKAVK 124
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: A0A015L4Z8_RHIIW (BED-type domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L4Z8_RHIIW)

HSP 1 Score: 50.4 bits (119), Expect = 4.090e-5
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 0 
Query:   13 RITDTTNMWTS-LTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVV 92
            +I+ TT++WTS ++    L +T+H+I + WELK +LL+  P  GSH     T K +  +E+      NI    TDN +N++
Sbjct:  171 KISLTTDIWTSKISKDCYLGVTMHYINNNWELKNLLLDLIPVNGSHIAGLITSKLLQILEEFS-ISNNILALTTDNRSNMI 250
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI000904AA09 (zinc finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000904AA09)

HSP 1 Score: 50.1 bits (118), Expect = 6.200e-5
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 0 
Query:    2 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHT------GKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 96
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   HT      G RA   A D  E++      +    TDNG N+V  ++
Sbjct:   45 EKVAAELRYVKHVAATSDLWSSRTVEPYISLTVHYIDNKWELRTRVLETAYFPSDHTREMVGQGLRAMLSAWDISEED------LVAITTDNGPNIVKAVK 139
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI000DF3D1B3 (zinc finger BED domain-containing protein 1-like n=2 Tax=Oreochromis TaxID=8139 RepID=UPI000DF3D1B3)

HSP 1 Score: 49.7 bits (117), Expect = 8.620e-5
Identity = 26/95 (27.37%), Postives = 51/95 (53.68%), Query Frame = 0 
Query:    2 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 96
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   H G+   +     +      ++++    TDNG N+V  ++
Sbjct:  156 EKVAAELRYVKHVAATSDLWSSRTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHMGEMVGQGLRAMLSAWDISEEDLVAITTDNGPNIVKAVK 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI000905C8589.630e-628.42zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI00195353411.530e-528.42E3 SUMO-protein ligase ZBED1-like n=1 Tax=Oreochro... [more]
A0A015L4Z8_RHIIW4.090e-535.80BED-type domain-containing protein n=1 Tax=Rhizoph... [more]
UPI000904AA096.200e-531.68zinc finger BED domain-containing protein 1-like n... [more]
UPI000DF3D1B38.620e-527.37zinc finger BED domain-containing protein 1-like n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..96
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168604contigH-elongata_contig168604:459..746 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168604.4275.1mRNA_H-elongata_contig168604.4275.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig168604 459..746 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig168604.4275.1 ID=prot_H-elongata_contig168604.4275.1|Name=mRNA_H-elongata_contig168604.4275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MQKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEW
CPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf