mRNA_H-elongata_contig168604.4275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168604.4275.1
Unique NamemRNA_H-elongata_contig168604.4275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI000905C858 (zinc finger BED domain-containing protein 1 n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000905C858)

HSP 1 Score: 52.4 bits (124), Expect = 9.630e-6
Identity = 27/95 (28.42%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:    4 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 288
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   HTG+   +     +      ++++    TDNG N+V  ++
Sbjct:  198 EKVAAELRYVKHVAATSDLWSSCTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHTGEMVGQGLRAMLSAWDISEEDLVAITTDNGPNIVKAVK 292
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI0019535341 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Oreochromis aureus TaxID=47969 RepID=UPI0019535341)

HSP 1 Score: 51.6 bits (122), Expect = 1.530e-5
Identity = 27/95 (28.42%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:    4 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 288
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   HTG+   +     +      ++++    TDNG N+V  ++
Sbjct:   30 EKVAAELRYVKHVAATSDLWSSRTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHTGEMVGQGLRVMLSAWDISEEDLVAITTDNGPNIVKAVK 124
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: A0A015L4Z8_RHIIW (BED-type domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015L4Z8_RHIIW)

HSP 1 Score: 50.4 bits (119), Expect = 4.090e-5
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   37 RITDTTNMWTS-LTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVV 276
            +I+ TT++WTS ++    L +T+H+I + WELK +LL+  P  GSH     T K +  +E+      NI    TDN +N++
Sbjct:  171 KISLTTDIWTSKISKDCYLGVTMHYINNNWELKNLLLDLIPVNGSHIAGLITSKLLQILEEFS-ISNNILALTTDNRSNMI 250
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI000904AA09 (zinc finger BED domain-containing protein 1-like n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=UPI000904AA09)

HSP 1 Score: 50.1 bits (118), Expect = 6.200e-5
Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:    4 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHT------GKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 288
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   HT      G RA   A D  E++      +    TDNG N+V  ++
Sbjct:   45 EKVAAELRYVKHVAATSDLWSSRTVEPYISLTVHYIDNKWELRTRVLETAYFPSDHTREMVGQGLRAMLSAWDISEED------LVAITTDNGPNIVKAVK 139
[Close]
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Match: UPI000DF3D1B3 (zinc finger BED domain-containing protein 1-like n=2 Tax=Oreochromis TaxID=8139 RepID=UPI000DF3D1B3)

HSP 1 Score: 49.7 bits (117), Expect = 8.620e-5
Identity = 26/95 (27.37%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    4 QKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEWCPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR 288
            +KV  ++   + +  T+++W+S T    +SLT+H+I +KWEL+  +LE   F   H G+   +     +      ++++    TDNG N+V  ++
Sbjct:  156 EKVAAELRYVKHVAATSDLWSSRTMEPYISLTVHYIDNKWELRTRVLETAYFPSDHMGEMVGQGLRAMLSAWDISEEDLVAITTDNGPNIVKAVK 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168604.4275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI000905C8589.630e-628.42zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI00195353411.530e-528.42E3 SUMO-protein ligase ZBED1-like n=1 Tax=Oreochro... [more]
A0A015L4Z8_RHIIW4.090e-535.80BED-type domain-containing protein n=1 Tax=Rhizoph... [more]
UPI000904AA096.200e-531.68zinc finger BED domain-containing protein 1-like n... [more]
UPI000DF3D1B38.620e-527.37zinc finger BED domain-containing protein 1-like n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168604contigH-elongata_contig168604:459..746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.0728734-CDS-H-elongata_contig168604:458..7461622929985.0728734-CDS-H-elongata_contig168604:458..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168604 459..746 -
1691679235.1395776-CDS-H-elongata_contig168604:458..7461691679235.1395776-CDS-H-elongata_contig168604:458..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168604 459..746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168604.4275.1prot_H-elongata_contig168604.4275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168604 459..746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168604.4275.1

>prot_H-elongata_contig168604.4275.1 ID=prot_H-elongata_contig168604.4275.1|Name=mRNA_H-elongata_contig168604.4275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MQKVVVDMLEKQRITDTTNMWTSLTNYALLSLTLHWIIHKWELKGVLLEW
CPFEGSHTGKRATEKAIDTIEKNGGQQKNINTFVTDNGANVVTELR
back to top

mRNA from alignment at H-elongata_contig168604:459..746-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168604.4275.1 ID=mRNA_H-elongata_contig168604.4275.1|Name=mRNA_H-elongata_contig168604.4275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig168604:459..746- (Himanthalia elongata Himel1 dioecious)
ATGCAAAAGGTGGTTGTCGATATGCTCGAAAAACAGCGAATCACAGATAC
CACGAATATGTGGACATCATTAACGAATTATGCATTACTTTCGTTGACAC
TTCACTGGATCATTCACAAGTGGGAATTGAAAGGCGTTTTACTGGAGTGG
TGTCCATTCGAGGGATCCCACACAGGCAAAAGGGCGACTGAAAAAGCGAT
CGACACGATCGAGAAAAACGGCGGTCAGCAGAAGAACATAAATACCTTCG
TTACAGACAACGGGGCTAATGTCGTGACAGAACTTCGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig168604:459..746-

>mRNA_H-elongata_contig168604.4275.1 ID=mRNA_H-elongata_contig168604.4275.1|Name=mRNA_H-elongata_contig168604.4275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig168604:459..746- (Himanthalia elongata Himel1 dioecious)
ATGCAAAAGGTGGTTGTCGATATGCTCGAAAAACAGCGAATCACAGATAC
CACGAATATGTGGACATCATTAACGAATTATGCATTACTTTCGTTGACAC
TTCACTGGATCATTCACAAGTGGGAATTGAAAGGCGTTTTACTGGAGTGG
TGTCCATTCGAGGGATCCCACACAGGCAAAAGGGCGACTGAAAAAGCGAT
CGACACGATCGAGAAAAACGGCGGTCAGCAGAAGAACATAAATACCTTCG
TTACAGACAACGGGGCTAATGTCGTGACAGAACTTCGTATGCAAAAGGTG
GTTGTCGATATGCTCGAAAAACAGCGAATCACAGATACCACGAATATGTG
GACATCATTAACGAATTATGCATTACTTTCGTTGACACTTCACTGGATCA
TTCACAAGTGGGAATTGAAAGGCGTTTTACTGGAGTGGTGTCCATTCGAG
GGATCCCACACAGGCAAAAGGGCGACTGAAAAAGCGATCGACACGATCGA
GAAAAACGGCGGTCAGCAGAAGAACATAAATACCTTCGTTACAGACAACG
GGGCTAATGTCGTGACAGAACTTCGT
back to top