prot_H-elongata_contig168483.4267.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig168483.4267.1
Unique Nameprot_H-elongata_contig168483.4267.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length120
Homology
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A6H5KAJ4_9PHAE (Brix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ4_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.530e-48
Identity = 93/125 (74.40%), Postives = 100/125 (80.00%), Query Frame = 0
Query:    1 GKVWVRKYQIVDKGDKK--GLN-----ASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVFS 118
            GKVWVR YQIVDKGD    GLN     A+T  G G    G E D LSLVEMGPRFVL+PIRVFAGS GGPTLY+N AYVSPN VRSA+KR+AGTKFEDRQEAKK+V+ KK EPAVPRGPLDDVFS
Sbjct:  315 GKVWVRNYQIVDKGDGSTTGLNRKIEAATTAAGGGGEGTGAE-DSLSLVEMGPRFVLNPIRVFAGSFGGPTLYNNAAYVSPNDVRSARKRKAGTKFEDRQEAKKVVRGKKAEPAVPRGPLDDVFS 438          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: D8LM67_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM67_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.170e-28
Identity = 68/118 (57.63%), Postives = 74/118 (62.71%), Query Frame = 0
Query:    1 GKVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVFS 118
            GKVWVR YQIVDKGD      STTG                        L P        GGPTLY+N AYVSPN VRSA+KR+AGTKFEDRQEAKK+V+ KK EPAVPRGPLDD+FS
Sbjct:  235 GKVWVRNYQIVDKGD-----GSTTG------------------------LKPF-------GGPTLYNNAAYVSPNDVRSARKRKAGTKFEDRQEAKKVVRGKKAEPAVPRGPLDDLFS 316          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S2EY12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY12_TRICV)

HSP 1 Score: 103 bits (257), Expect = 3.200e-24
Identity = 58/119 (48.74%), Postives = 73/119 (61.34%), Query Frame = 0
Query:    1 GKVWVRKYQIVDKGDKKGLNASTTGGRG--SSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            GK+WVR YQI++       N  TT      + ++    D  +LVE+GPRFVLDPIR+F GS GG TLY N A+VSPN +R+A KR  G  +EDR  A+K  +E K    VP  PL DVF
Sbjct:  211 GKIWVRNYQILE-------NQPTTAKEAHFAKKSPGSTDGTNLVEIGPRFVLDPIRIFRGSFGGQTLYKNNAFVSPNEIRAADKREMGKAYEDRVRAQKRRREWKDNFVVPEDPLGDVF 322          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A835YV20_9STRA (Brix domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV20_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.080e-24
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 0
Query:    2 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            KVWVR YQI+D GD         G +      Q  +  SLVE+GPRFVL+PIR+F+GS GGPTLY N AYVSPN VR+ KKR  G K+ D+  A+   +EK       + P DD+F
Sbjct:  258 KVWVRNYQIIDAGD--------GGAKEKKLVHQGKEVTSLVEIGPRFVLEPIRLFSGSFGGPTLYQNPAYVSPNEVRANKKRAEGAKYHDKATARIQAREKIENLVRVQDPTDDIF 365          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S0Y7K0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7K0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.700e-23
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 0
Query:    2 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            K+WVR YQIV +     L A     +   R GQE D  SLVE+GPRFVL+PIR+F GS GG TL+ N  +VSPN +R+ +K+R G  +E R+E++K+ K ++ E  +P  PL  VF
Sbjct:  220 KIWVRNYQIVQQQPTNALEAH----QAKKRNGQE-DSTSLVEIGPRFVLNPIRIFRGSFGGQTLFQNPDFVSPNEIRAIEKKRKGRSYELRKESQKIRKSRQEEYVLPEDPLGSVF 330          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A1E7F9Z5_9STRA (Brix-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9Z5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.720e-23
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 0
Query:    2 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            K+WVR YQI+++     L A T       ++GQE +  SLVE+GPRFVL+PIR+F GS GG TL+ N  +VSPN +R+ +K+R G  + DR++++K  K +  E  +P  PLD VF
Sbjct:  219 KIWVRNYQILEQQATNALEAHTL----KKKSGQE-ESTSLVEIGPRFVLNPIRIFRGSFGGQTLFQNPDFVSPNEIRAEEKKRQGLSYTDRKDSQKRRKTRHEELVLPEDPLDSVF 329          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S3L9L9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9L9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.760e-22
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 0
Query:    2 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            ++WVR YQI+++       A         ++G E+   SLVE+GPRFVL+PIR+F GS GG TLY N  YVSPNA R+ +++  G  +E+R+ ++ L KE+K +  VP  PLD VF
Sbjct:  236 RIWVRNYQILEQQPANAKEAHQV-----KKSGHELST-SLVEIGPRFVLNPIRIFRGSFGGQTLYRNPDYVSPNATRAMERKAKGMAYEERKNSQNLRKERKAQIVVPEDPLDSVF 345          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A448YY42_9STRA (Brix domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YY42_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.040e-22
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 0
Query:    2 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            K+WVR YQIV++     L A     +    +GQE +  SLVE+GPRFVL+PIR+F GS GG TL+ N  +VSPN +R+ +K+R G  +E R+E++K+ K ++ +  +P  PL+ VF
Sbjct:  221 KIWVRNYQIVEEQPTNALEAH----QAKKLSGQE-ESTSLVEIGPRFVLNPIRIFRGSFGGQTLFQNPDFVSPNEIRAVEKKRKGRSYELRKESQKMRKSRQEDYVLPEDPLNSVF 331          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A6S9HVR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HVR3_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 2.220e-22
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 0
Query:    1 GKVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLD--DVFS 118
            GKVWVR +QI+D+ D   +       R + ++G   +  SLVE+GPRFVL PIR+F GS GG TLY N A+VSPNA R+ K+R+ G K+ DRQ AK   KE+     +P+  L+   VFS
Sbjct:  251 GKVWVRNFQILDQADGGKVE------RAAEKSGNLDELTSLVEIGPRFVLTPIRIFDGSFGGATLYQNPAFVSPNAARAQKRRKKGLKYTDRQIAKTTSKERAQSNVMPKTGLEMQTVFS 364          
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S2EW86_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EW86_TRICV)

HSP 1 Score: 91.7 bits (226), Expect = 1.060e-21
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0
Query:   37 DPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 117
            D  +LVE+GPRFVLDPIR+F GS GG TLY N A+VSPN +R+A KR  G  +EDR  A+K  +E K    VP  PL DVF
Sbjct:   24 DGTNLVEIGPRFVLDPIRIFRGSFGGQTLYKNDAFVSPNEIRAADKREMGKAYEDRVRAQKRRREWKDNFVVPEDPLGDVF 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAJ4_9PHAE2.530e-4874.40Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM67_ECTSI3.170e-2857.63Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2EY12_TRICV3.200e-2448.74Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A835YV20_9STRA8.080e-2449.14Brix domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0Y7K0_9STRA2.700e-2347.41Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7F9Z5_9STRA3.720e-2345.69Brix-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S3L9L9_9STRA1.760e-2244.83Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448YY42_9STRA2.040e-2244.83Brix domain-containing protein n=2 Tax=Pseudo-nitz... [more]
A0A6S9HVR3_HETAK2.220e-2247.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2EW86_TRICV1.060e-2158.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13634:SF0RIBOSOME BIOGENESIS PROTEIN BRX1 HOMOLOGcoord: 1..117
IPR026532Ribosome biogenesis protein BRX1PANTHERPTHR13634RIBOSOME BIOGENESIS PROTEIN BRIXcoord: 1..117
IPR007109Brix domainPROSITEPS50833BRIXcoord: 1..61
score: 9.051

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168483contigH-elongata_contig168483:3..362 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168483.4267.1mRNA_H-elongata_contig168483.4267.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig168483 3..362 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig168483.4267.1 ID=prot_H-elongata_contig168483.4267.1|Name=mRNA_H-elongata_contig168483.4267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
GKVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVL
DPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVK
EKKTEPAVPRGPLDDVFSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026532BRX1
IPR007109Brix