prot_H-elongata_contig168243.4256.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig168243.4256.1
Unique Nameprot_H-elongata_contig168243.4256.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A836CC18_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC18_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.970e-18
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPH 58
            F AFG I +++MSKD  TG+HKGFCF+EY +   AE+ALN+MNGF+LAGR IKVGRP+
Sbjct:  139 FGAFGQIRAVDMSKDPATGKHKGFCFIEYMEPASAEAALNSMNGFELAGRPIKVGRPN 196          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.960e-17
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 59
            F  FG ++ ++MS D+ TG+HKGFCF+EY D   A++AL AMNGF+LAGRAIKVGRP N
Sbjct:  307 FANFGALKLVDMSHDSSTGRHKGFCFIEYVDVKSADAALRAMNGFELAGRAIKVGRPLN 365          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A0U9HK97_KLENI (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HK97_KLENI)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-16
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHNPA 61
            F AFG I  ++M +DA T +HKGFCF+E+  S  AE+ALN MN F LAGR +KVGRPHN A
Sbjct:  108 FSAFGSIHKIDMPRDAATAKHKGFCFIEFHSSEAAENALNTMNEFVLAGRKLKVGRPHNIA 168          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A433PH05_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PH05_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 2.440e-14
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 59
            F  FG I+S+ MS D  TG+HKGFCF+E+     A  AL+AMNG DL GR +KVGRP+N
Sbjct:  147 FGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALDAMNGADLGGRQLKVGRPNN 205          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S1N636_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N636_9EUGL)

HSP 1 Score: 75.1 bits (183), Expect = 2.440e-14
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHNPA 61
            F   G I +++M+++   G+HKGFCF+E+  +  AE A+  MNGF LAGR+++VGRPHNPA
Sbjct:  139 FERCGAIRNVQMTREPQGGKHKGFCFIEFEHTDSAEMAIQTMNGFTLAGRSLRVGRPHNPA 199          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A433QFW3_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QFW3_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 3.670e-14
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 59
            F  FG I+S+ MS D  TG+HKGFCF+E+     A  AL AMNG DL GR +KVGRP+N
Sbjct:  150 FGQFGSIKSVSMSVDPATGKHKGFCFIEFETPEAAAMALEAMNGADLGGRQLKVGRPNN 208          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S2WU02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU02_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.810e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRP 57
            F +FG I  + MS +  TG+HKGFCF+EY ++  A+ AL AMNGF+LAGR IKVGRP
Sbjct:  158 FGSFGNIIDVTMSFEPATGKHKGFCFIEYDNTPAADQALQAMNGFELAGRPIKVGRP 214          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A397GDA6_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GDA6_9GLOM)

HSP 1 Score: 73.6 bits (179), Expect = 5.350e-14
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 59
            F  FG I+S+ MS D +TG+HKGFCF+E+    GA  AL +MNG +L GR +KVGRP+N
Sbjct:  184 FGQFGAIKSVSMSLDPLTGKHKGFCFIEFETPEGASLALESMNGAELGGRQLKVGRPNN 242          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S1H1Q7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H1Q7_HEMAN)

HSP 1 Score: 72.8 bits (177), Expect = 5.900e-14
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHN 59
            F  FGPI+ ++MS +  TG+ KGF F+E+ D + AE+   AMNGF+L GRAIK+GRPH+
Sbjct:   95 FAPFGPIKCIDMSYEPATGKSKGFGFVEFYDGLHAEACQMAMNGFNLGGRAIKIGRPHH 153          
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Match: A0A7S4FXV6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FXV6_9EUGL)

HSP 1 Score: 73.9 bits (180), Expect = 6.240e-14
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 FRAFGPIESLEMSKDAVTG-QHKGFCFLEYADSIGAESALNAMNGFDLAGRAIKVGRPHNPA 61
            F   G I S++M+++   G +HKGFCF+E+A    AE+A+  MNG+ LAGR+++VGRPHNPA
Sbjct:  152 FERCGTIRSVQMTREPANGNKHKGFCFIEFASCESAETAIATMNGYQLAGRSLRVGRPHNPA 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168243.4256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC18_9STRA1.970e-1865.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FWX1_ECTSI8.960e-1762.71RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
A0A0U9HK97_KLENI1.610e-1660.66Putative RNA recognition motif containing protein ... [more]
A0A433PH05_9FUNG2.440e-1457.63RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A7S1N636_9EUGL2.440e-1450.82Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A433QFW3_9FUNG3.670e-1457.63Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]
A0A7S2WU02_9STRA3.810e-1459.65Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A397GDA6_9GLOM5.350e-1455.93Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A7S1H1Q7_HEMAN5.900e-1454.24Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S4FXV6_9EUGL6.240e-1451.61Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 1..55
e-value: 0.0067
score: 25.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 1..53
e-value: 3.7E-15
score: 55.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..59
score: 13.106
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..61
e-value: 3.9E-16
score: 61.2
NoneNo IPR availablePANTHERPTHR47330FAMILY NOT NAMEDcoord: 1..59
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168243contigH-elongata_contig168243:331..827 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168243.4256.1mRNA_H-elongata_contig168243.4256.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig168243 331..827 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig168243.4256.1 ID=prot_H-elongata_contig168243.4256.1|Name=mRNA_H-elongata_contig168243.4256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FRAFGPIESLEMSKDAVTGQHKGFCFLEYADSIGAESALNAMNGFDLAGR
AIKVGRPHNPA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf