prot_H-elongata_contig168053.4245.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig168053.4245.1
Unique Nameprot_H-elongata_contig168053.4245.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length118
Homology
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BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 4.370e-62
Identity = 97/118 (82.20%), Postives = 102/118 (86.44%), Query Frame = 0 
Query:    1 GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSN-VPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPSLNNRY 117
            GK+CGDECDNNRVYVSGLPTTITE DLVEKFS+IGIIARIRQ        KRGYKDQWP+SVRIYKDD+   PKGDCIIKYEE  SAHAALRWFDGI+F G KIGVAMAAKPSLNNRY
Sbjct:   49 GKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQ--------KRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158
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BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.000e-59
Identity = 95/118 (80.51%), Postives = 103/118 (87.29%), Query Frame = 0 
Query:    1 GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKD-DSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPSLNNRY 117
            GK+CGDECDNNRVYVSGLPTTITE DLV+KFS+IGIIARIRQA       KRGYKDQWP+SVRIYKD ++  PKGDCIIKYEE  SAHAA+RWFDGI+F G KIGVAMAAKPSLNNRY
Sbjct:  233 GKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARAS----KRGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346
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BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 120 bits (301), Expect = 8.510e-32
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN+R+Y+S LP  +  ++L E F SIGI+ARI+Q        KRGYKDQWPYS+++Y DDS   KGD ++ YE+ ++AH+A  +F+G +  G KI V MA K +
Sbjct:  104 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 206
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BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 120 bits (301), Expect = 1.530e-30
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN+R+Y+S LP  +  ++L E F SIGI+ARI+Q        KRGYKDQWPYS+++Y DDS   KGD ++ YE+ ++AH+A  +F+G +  G KI V MA K +
Sbjct:  203 ENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEKSA 305
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BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 2.750e-29
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN R+Y+SGLP  + E +L E F  IG +AR++Q        KRGYKDQWPY+++IY+D+S   KGD ++ YE+  +AH+A  +F+     G KI VAMAAK +
Sbjct:  200 ENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 302
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BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 2.900e-29
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN R+Y+SGLP  + E +L E F  IG +ARI+Q        KRGYKDQWPY+++IY+D+S   KGD ++ YE+  +AH+A  +F+     G KI VAMAAK +
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305
[Close]
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A835HAE2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HAE2_9MAGN)

HSP 1 Score: 117 bits (292), Expect = 8.170e-29
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN R+Y+S LP  +T  +L E FS IG +ARI+Q        KRGYKDQWPYS++IY DDS   KGD ++ YE+ ++AH+A  +F+     G KI V MA K +
Sbjct:  254 ENCGDTCDNARIYISNLPADVTTDELQELFSGIGQVARIKQ--------KRGYKDQWPYSIKIYTDDSGKSKGDAVLSYEDPSAAHSAGGFFNNYELRGHKITVGMAEKSA 356
[Close]
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A0A0K9QQJ8_SPIOL (Uncharacterized protein n=3 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9QQJ8_SPIOL)

HSP 1 Score: 117 bits (293), Expect = 9.740e-29
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN+R+Y+S LP  +  ++L E F SIG +ARI+Q        KRGYKDQWPYS+++Y DDS   KGD ++ YE+ ++AH+A  +F+G +  G KI V+MA K +
Sbjct:  306 ENCGDSCDNSRIYISNLPPDVAVEELRELFGSIGTVARIKQ--------KRGYKDQWPYSIKLYTDDSGKNKGDGVLSYEDPSAAHSAGGFFNGHDIRGYKINVSMAEKSA 408
[Close]
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: A9U3C2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U3C2_PHYPA)

HSP 1 Score: 117 bits (292), Expect = 1.820e-28
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            +NCGD CDN R+Y+SGLP  + E +L E F  IG +ARI+Q        KRGYKDQWPY+++IY+D+S   KGD ++ YE+  +AH+A  +F+     G KI VAMAAK +
Sbjct:  203 ENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQ--------KRGYKDQWPYNIKIYQDESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAKSA 305
[Close]
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Match: UPI000905CCC9 (transcription initiation factor TFIID subunit 15b-like n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905CCC9)

HSP 1 Score: 115 bits (287), Expect = 1.950e-28
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:    2 KNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSIKRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVGKKIGVAMAAKPS 112
            ++CGD CDN+R+Y+S LP  +T ++L E F SIG +ARI+Q        KRGYKDQWP+S++IY D+    KGD ++ YE+ ++AH+A  +F+  +F G KI VAMA K +
Sbjct:  207 EHCGDSCDNSRIYISNLPPDVTIEELQELFGSIGQVARIKQ--------KRGYKDQWPWSIKIYTDEKGNNKGDAVLSYEDPSAAHSAGGFFNNYDFRGYKISVAMAEKSA 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168053.4245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIQ1_ECTSI4.370e-6282.20RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L8L8_9PHAE5.000e-5980.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A803KS81_CHEQI8.510e-3249.55RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A0A803LCU5_CHEQI1.530e-3049.55RRM domain-containing protein n=1 Tax=Chenopodium ... [more]
A9T0V1_PHYPA2.750e-2948.65Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2K1JP98_PHYPA2.900e-2949.55Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A835HAE2_9MAGN8.170e-2949.55Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A0K9QQJ8_SPIOL9.740e-2948.65Uncharacterized protein n=3 Tax=Chenopodioideae Ta... [more]
A9U3C2_PHYPA1.820e-2849.55Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
UPI000905CCC91.950e-2847.75transcription initiation factor TFIID subunit 15b-... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..106
e-value: 7.6E-7
score: 38.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 13..41
e-value: 1.1E-4
score: 22.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..110
score: 12.202
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..116
e-value: 1.6E-16
score: 62.5
NoneNo IPR availablePANTHERPTHR12999:SF7ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2coord: 2..112
NoneNo IPR availablePANTHERPTHR12999FAMILY NOT NAMEDcoord: 2..112
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168053contigH-elongata_contig168053:186..1179 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168053.4245.1mRNA_H-elongata_contig168053.4245.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig168053 186..1179 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig168053.4245.1 ID=prot_H-elongata_contig168053.4245.1|Name=mRNA_H-elongata_contig168053.4245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
GKNCGDECDNNRVYVSGLPTTITEKDLVEKFSSIGIIARIRQASQQLCSI
KRGYKDQWPYSVRIYKDDSNVPKGDCIIKYEEATSAHAALRWFDGINFVG
KKIGVAMAAKPSLNNRY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf