prot_H-elongata_contig167490.4208.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig167490.4208.1
Unique Name	prot_H-elongata_contig167490.4208.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	174

Homology

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BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.340e-41
Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIGVSE  G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTL 216

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.480e-40
Identity = 75/170 (44.12%), Postives = 102/170 (60.00%), Query Frame = 0

Query:    9 VWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAMAGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            +WHRRL H H   ++   +   TG+     +  C+ C L       HPKTA H   +P Q  Y DL+G  +P A  G+ YVSK TDEY++   VYL+ TKD+A+ +L+ F+   VIP   R+ R R+D GGEYT E + ++C   GI+Q+F A  TPQQ G+SER GRTL
Sbjct:  470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTL 639

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.830e-39
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIGVSER G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 7.350e-39
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIGVSER G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216

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BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 7.410e-39
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIGVSER G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 7.650e-39
Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIG SER G+TL
Sbjct:  415 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTL 592

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 2.530e-38
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ F  ++S C VC +       HPK +  +++RP QL   D +G   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIGVSER G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDFRDSLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 216

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.950e-38
Identity = 79/178 (44.38%), Postives = 103/178 (57.87%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR  C  + I  ++AATNTPQQ+GVSER G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTL 216

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 5.170e-38
Identity = 79/178 (44.38%), Postives = 103/178 (57.87%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GT + +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  K+TD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIGVSER G+TL
Sbjct:  363 LVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTL 540

[Close]

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.850e-38
Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 0

Query:    4 IANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALG------HPKTANHKVNRPFQLRYGDLMGAFTPVAM---AGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGIIQDFAATNTPQQIGVSERMGRTL 172
            + +A  WHRRL HL+A+SLDILRK  GTG+ +  ++S C VC +       HPK +  +++RP QL   D MG   P A      + Y  KITD+YTK   VYLL  K    +++  +          RI   R DKGGE TG EFR YC  + I  ++AATNTPQQIG SER G+TL
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTL 216

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot

BLAST of mRNA_H-elongata_contig167490.4208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZ34_9PHAE	2.340e-41	44.94	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KY84_9PHAE	2.480e-40	44.12	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K500_9PHAE	5.830e-39	45.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JJR8_9PHAE	7.350e-39	45.51	Integrase catalytic domain-containing protein n=11...	[more]
A0A6H5KCT3_9PHAE	7.410e-39	45.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KT84_9PHAE	7.650e-39	44.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRJ1_9PHAE	2.530e-38	45.51	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KCM0_9PHAE	4.950e-38	44.38	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5KVF6_9PHAE	5.170e-38	44.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1R7_9PHAE	5.850e-38	44.94	Integrase catalytic domain-containing protein (Fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 50..173 e-value: 1.0E-18 score: 69.3
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 59..172 e-value: 1.7E-12 score: 47.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 56..173 score: 16.785
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..168
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 6..168
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 55..172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig167490	contig	H-elongata_contig167490:645..1184 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig167490.4208.1	mRNA_H-elongata_contig167490.4208.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig167490 642..1184 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig167490.4208.1 ID=prot_H-elongata_contig167490.4208.1|Name=mRNA_H-elongata_contig167490.4208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
MNAIANAQVWHRRLDHLHAQSLDILRKRDGTGITFEGAVSDCDVCALGHP
KTANHKVNRPFQLRYGDLMGAFTPVAMAGYKYVSKITDEYTKWTAVYLLT
TKDQALQSLQLFVGSTVIPFCGRIVRWRADKGGEYTGEEFRQYCLETGII
QDFAATNTPQQIGVSERMGRTLC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf