prot_H-elongata_contig166886.4186.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig166886.4186.1
Unique Name	prot_H-elongata_contig166886.4186.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	78

Homology

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BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.810e-12
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0

Query:    3 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA 57
            K+ ++RTDGGGE+ GQF       GIK+E  PP+TP+YNGV +RALGL+ D  +A
Sbjct:   84 KVYIVRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAALA 138

[Close]

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.330e-12
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0

Query:    3 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA 57
            K+ + RTDGGGE+ GQF     + GIK+E  PP+TP+YNGV +RALGL+ D  +A
Sbjct:  461 KVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALA 515

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BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 7.560e-12
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 0

Query:    3 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVALLRGVMEGKNDR-----LWEEAMAYA 78
            ++ V RTDGGGE+ GQF     + GIK+E  PP TP+YNGV +RALGL+ D  +A      E   D      LW EA++ A
Sbjct:   53 EVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCA 133

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BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.760e-11
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 0

Query:    3 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVALLRGVMEGKNDR-----LWEEAMAYA 78
            ++ V RTDGGGE+ GQF     + GIK+E  PP TP+YNGV +RALGL+ D  +A      E   D      LW EA++ A
Sbjct:  257 EVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCA 337

[Close]

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.860e-11
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 0

Query:    3 KIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA 57
            ++ + RTDGGGE+ GQF     + GIK E  PP+TP+YNGV +RALGL+ D  +A
Sbjct:   84 EVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALA 138

[Close]

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.570e-11
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 0

Query:    6 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 78
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+    +A       L   V   K DRLW EAM +A
Sbjct:   44 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWA 124

[Close]

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.820e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0

Query:    6 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 78
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:  378 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 458

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BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.980e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0

Query:    6 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 78
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:  256 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 336

[Close]

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.000e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0

Query:    6 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 78
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:   44 IVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 124

[Close]

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.060e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0

Query:    6 VIRTDGGGEWHG-QFLSFLSKLGIKRESAPPYTPQYNGVVKRALGLVRDKTVA-------LLRGVMEGKNDRLWEEAMAYA 78
            ++R+D GGE+ G +F S  ++L IK+E  P Y+PQYNGV +R LGL+ +  +A       L   V   K D+LW EAM +A
Sbjct:  311 IVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWA 391

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot

BLAST of mRNA_H-elongata_contig166886.4186.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K2T3_9PHAE	3.810e-12	54.55	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JIN8_9PHAE	5.330e-12	54.55	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KKB4_9PHAE	7.560e-12	45.68	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5LL52_9PHAE	1.760e-11	45.68	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KAM7_9PHAE	1.860e-11	52.73	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KWE4_9PHAE	7.570e-11	44.44	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	8.820e-11	43.21	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5L3Y0_9PHAE	8.980e-11	43.21	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KKK1_9PHAE	9.000e-11	43.21	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5JRL9_9PHAE	9.060e-11	43.21	Integrase catalytic domain-containing protein n=2 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..78 e-value: 2.4E-8 score: 35.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..78 score: 11.907
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..77

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig166886	contig	H-elongata_contig166886:1021..1254 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig166886.4186.1	mRNA_H-elongata_contig166886.4186.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig166886 1021..1254 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig166886.4186.1 ID=prot_H-elongata_contig166886.4186.1|Name=mRNA_H-elongata_contig166886.4186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
ALKIGVIRTDGGGEWHGQFLSFLSKLGIKRESAPPYTPQYNGVVKRALGL
VRDKTVALLRGVMEGKNDRLWEEAMAYA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf