prot_H-elongata_contig166735.4181.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig166735.4181.1
Unique Nameprot_H-elongata_contig166735.4181.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: D8LJ72_ECTSI (Photosystem II 11 kDa protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ72_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.070e-36
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            MVEFV+NYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEY+DIERAIKRQR
Sbjct:  141 MVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A836CEQ5_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.050e-29
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M++FV+ YRR  N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRLL+EY+ IE+AIKRQR
Sbjct:  131 MIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLLEEYNQIEKAIKRQR 196          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A836C8X1_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.540e-29
Identity = 52/66 (78.79%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M++FV+ YRR  N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRL++EYS I++AIKRQR
Sbjct:  119 MIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLMEEYSQIDKAIKRQR 184          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S2UVY8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.810e-28
Identity = 50/66 (75.76%), Postives = 61/66 (92.42%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            MV+FVA YRR++ +NG+LSYS LYTSI+VLAGHYASYGPKFPVPEKRRKRLLQEY+DIE+ +++ R
Sbjct:  153 MVDFVAQYRRNNKVNGRLSYSTLYTSINVLAGHYASYGPKFPVPEKRRKRLLQEYNDIEKNMRKNR 218          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: F0YDF6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDF6_AURAN)

HSP 1 Score: 100 bits (248), Expect = 5.670e-26
Identity = 46/66 (69.70%), Postives = 59/66 (89.39%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M++FVA YRR +N++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY++IE+ IK++R
Sbjct:   37 MIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A6V1P1T2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P1T2_HETAK)

HSP 1 Score: 101 bits (251), Expect = 2.080e-25
Identity = 45/66 (68.18%), Postives = 59/66 (89.39%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M++F++ YRR  N++GK+SYS LYTS++VLAGHYASYG KFPVPEKRRKRL QEY++IE+ +K+QR
Sbjct:  124 MIDFISYYRRFPNVSGKMSYSTLYTSVNVLAGHYASYGTKFPVPEKRRKRLAQEYAEIEKNLKKQR 189          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S3ZPN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPN6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.980e-25
Identity = 44/66 (66.67%), Postives = 59/66 (89.39%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M++FV+ YRR +N++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY+++E+ IK++R
Sbjct:   69 MIDFVSFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLFQEYAEVEKNIKKRR 134          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: W7TYA6_9STRA (Photosystem ii 11 kd protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYA6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.730e-23
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M +FV+ YRR +N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+++I+R IKR R
Sbjct:  125 MTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S2B2K4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2K4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.630e-23
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIK 63
            MV+FV+ YRR SN+ GK S+S LYT+I+VLAGHY SYG KFPVPEKRRKRL QEYS+IE+ IK
Sbjct:  164 MVDFVSFYRRFSNVAGKQSFSTLYTAINVLAGHYTSYGTKFPVPEKRRKRLYQEYSEIEKNIK 226          
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Match: A0A7S3NKQ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKQ6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.520e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 0
Query:    1 MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYSDIERAIKRQR 66
            M  FVA YRR + + GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY +IE+ IKR+R
Sbjct:  118 MNAFVAFYRRFTTVTGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYDEIEKNIKRKR 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig166735.4181.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ72_ECTSI3.070e-3696.97Photosystem II 11 kDa protein n=2 Tax=Ectocarpus T... [more]
A0A836CEQ5_9STRA1.050e-2980.30Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A836C8X1_9STRA1.540e-2978.79Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A7S2UVY8_9STRA5.810e-2875.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YDF6_AURAN5.670e-2669.70Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6V1P1T2_HETAK2.080e-2568.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3ZPN6_9STRA3.980e-2566.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TYA6_9STRA2.730e-2366.67Photosystem ii 11 kd protein n=2 Tax=Monodopsidace... [more]
A0A7S2B2K4_9STRA4.630e-2373.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3NKQ6_9STRA6.520e-2369.70Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..66
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 2..66
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810coord: 1..66
e-value: 3.0E-25
score: 90.4
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 2..62
e-value: 4.5E-17
score: 62.7
IPR025585Photosystem II Pbs27PANTHERPTHR34041FAMILY NOT NAMEDcoord: 2..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig166735contigH-elongata_contig166735:478..984 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig166735.4181.1mRNA_H-elongata_contig166735.4181.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig166735 475..984 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig166735.4181.1 ID=prot_H-elongata_contig166735.4181.1|Name=mRNA_H-elongata_contig166735.4181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MVEFVANYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKR
LLQEYSDIERAIKRQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038450PSII_Pbs27_sf
IPR025585PSII_Pbs27