prot_H-elongata_contig16643.4172.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16643.4172.1
Unique Nameprot_H-elongata_contig16643.4172.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length576
Homology
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 6.250e-109
Identity = 201/324 (62.04%), Postives = 227/324 (70.06%), Query Frame = 0
Query:  271 FRPPWRGGGRMAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSP------------VSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARK------VRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGELESVIGNQV 576
            FRP WRGG R+APPNEGKKEVP G E+CL GK FVVSGVLDSLGREAA DLIKQYGGKVTG+VSSRT +L+LG+VLDDGRPPEEGSKYK+A  +KT++I+EDGLFKM+RDSNPKG Q P                 P ++NPY +   AV NPY+   +  A +                G A  G   +GTS             R +A     PGQMWVDKYKP +SS V+G+ GQVKKLK WL+ WE WHL   GAK P GKDNPGARAALLSGVPGVGKSSTATLVAREMGYHV ELNASDTR+K SLS EL SVIGN+V
Sbjct:  229 FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSNPKGQQPPGXXXXXXXXXXXAPASKPAVANPY-QPKKAVVNPYAS-MQAAAKKKAAVNPFGAAVIAGGKGKAPAGKSPAGTSXXXXXXXXXXXGARAAAAVRQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHL--KGAKAPTGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVMELNASDTRSKRSLSEELASVIGNKV 548          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A8J4D1N3_9CHLO (Replication factor C subunit 1 n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D1N3_9CHLO)

HSP 1 Score: 185 bits (470), Expect = 1.550e-46
Identity = 130/315 (41.27%), Postives = 169/315 (53.65%), Query Frame = 0
Query:  283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGG-QSPVSGKPP--------PISNPYAKATAAVTNPYSI--PKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
            PPN  +KEVP G  +CL G+ FV++GVLDSL R  A DLIK++GGKVT +VS +T++LL G     GR     SKY+ A+Q KTKVI+EDGLF ++R S P    + P +   P        P SN +    AA     S+  P+ P A               S+VGG+                            Q+WVDKYKP  S E++GN   V  LK WLECWE+ HL GA     +G     KD    +AALLSG PG+GK+S A ++ARE GY V E+NASD RNKSS     ++G+  +V+   V
Sbjct:  132 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGHNC--GR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFAQPEGPTTASTPGTAGPASIPTSNFFGSTVAAAGPGCSVRKPEGPVAPYNAGVRSQLPITGASSVGGSLN--------------------------QLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPTAKGGGSKPKDM-SKKAALLSGPPGIGKTSAAHIIARETGYEVVEMNASDVRNKSSKVSEGIAGKQSNVVKEMV 412          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A2K3D450_CHLRE (Replication factor C subunit 1 n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D450_CHLRE)

HSP 1 Score: 186 bits (471), Expect = 2.630e-46
Identity = 138/292 (47.26%), Postives = 174/292 (59.59%), Query Frame = 0
Query:  283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGS-KKSGTSSAEARKVRRSAKPSDAPGQ--MWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHL-GGAGAKPPQGKDNP---GARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGE 567
            PPN+G KE P G  +CL GK FV+SGVLDSLGRE A D IK++GG+VTG+VS +T++L++G     GR     SKY+KA++  TKVI+EDGLF +IR                  S P+  A  A   P S P       XXXXXXXXXXXXX        G+   +G SSA    V R    +   GQ  +WVDKYKPR S+E++GN   V  LK+WL  WE+ HL GGA      G   P     +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNK+  + E
Sbjct:  375 PPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGHHT--GR-----SKYRKAREHGTKVIDEDGLFSLIR-----------------ASEPFIPAENAAAPPASAPXXXXXXXXXXXXXXXXXXXXXXXAAQRPGAGAAAGPSSARPAGVTRQPAAAGDAGQYQLWVDKYKPRNSAELVGNNTLVDNLKSWLMNWEQVHLRGGAAPTAKGGGSKPKDLSKKAALLSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKAGKTSE 642          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A8J4GSG1_9CHLO (BRCT domain-containing protein n=5 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GSG1_9CHLO)

HSP 1 Score: 185 bits (470), Expect = 3.430e-46
Identity = 130/315 (41.27%), Postives = 169/315 (53.65%), Query Frame = 0
Query:  283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGG-QSPVSGKPP--------PISNPYAKATAAVTNPYSI--PKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
            PPN  +KEVP G  +CL G+ FV++GVLDSL R  A DLIK++GGKVT +VS +T++LL G     GR     SKY+ A+Q KTKVI+EDGLF ++R S P    + P +   P        P SN +    AA     S+  P+ P A               S+VGG+                            Q+WVDKYKP  S E++GN   V  LK WLECWE+ HL GA     +G     KD    +AALLSG PG+GK+S A ++ARE GY V E+NASD RNKSS     ++G+  +V+   V
Sbjct:  345 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGHNC--GR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFAQPEGPTTASTPGTAGPASIPTSNFFGSTVAAAGPGCSVRKPEGPVAPYNAGVRSQLPITGASSVGGSLN--------------------------QLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPTAKGGGSKPKDM-SKKAALLSGPPGIGKTSAAHIIARETGYEVVEMNASDVRNKSSKVSEGIAGKQSNVVKEMV 625          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A8J4ARP4_9CHLO (Replication factor C subunit 1 n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARP4_9CHLO)

HSP 1 Score: 185 bits (469), Expect = 4.500e-46
Identity = 133/312 (42.63%), Postives = 168/312 (53.85%), Query Frame = 0
Query:  283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKP----SDAPG----QMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
            PPN  KKE P G  +CL G+ FV++GVLDSL R  A DLIK++GGKVT +VS +T++LL+G     GR     SKY+ A+  KTKV++EDGLF ++R S P            P   P A  T     P SIP                    +A  GA  G +K G   A      RS  P    S   G    Q+WVDKYKP  S E++GN   V  LK W+ECWE+ H  GA A   +G     KD    +AALLSG PG+GK+S A ++ARE GY V E+NASD RNKSS     ++G+  +VI   V
Sbjct:  316 PPNYRKKEAPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLVGHNC--GR-----SKYRMAKHHKTKVLDEDGLFALLRASAPFA----------PPERPMATPTPGTAAPTSIPAS------------NFFGSTAAAAGAGTGGRKPGDPVALNDAGVRSQPPITGASSGGGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWIECWEQVHQRGAAAPTAKGGGSKPKDM-SKKAALLSGPPGIGKTSAAHIIARETGYEVVEMNASDVRNKSSKVSEGIAGKQSNVIKEMV 597          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A835T5C5_CHLIN (Replication factor C subunit 1 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5C5_CHLIN)

HSP 1 Score: 184 bits (467), Expect = 8.670e-46
Identity = 137/296 (46.28%), Postives = 176/296 (59.46%), Query Frame = 0
Query:  281 MAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQ----MWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQG-----KDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGE 567
            + PPN+G KE P G  +CL GK FV+SGVLDSLGRE A D IK++GG+ T +VS +TT+LL G     GR     SKY+KA++  TKVI+EDGLF +IR S P                P   A AA   P +     PA +XXXXXXXXXXXXX          + +G   + AR    + +P+ A  Q    +WVDKYKPR S E++GN   V  LK+WL  WE+ +L GA A   +G     KD    +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNK+  + E
Sbjct:  374 VPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRTTQAVSGKTTFLLAGHHC--GR-----SKYRKAREHSTKVIDEDGLFALIRASEP--------------FIPGGAAAAAPPAPAAXXXXAPASQXXXXXXXXXXXXXXXXXXXAAAQRAAGAGPSSARPAGVARQPAAAGDQSQYQLWVDKYKPRNSVELVGNNTLVANLKSWLMSWEQVNLRGAAAPTAKGGGAKPKDL-SKKAALLSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKAGKTSE 647          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A836BBT5_9CHLO (Replication factor C subunit 1 n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBT5_9CHLO)

HSP 1 Score: 184 bits (466), Expect = 1.160e-45
Identity = 140/293 (47.78%), Postives = 177/293 (60.41%), Query Frame = 0
Query:  281 MAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRS-AKPSDAPG-QMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNP----GARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSSLSGE 567
            + PPN+G KE P G  +CL GK FV+SGVLDSLGR+ A D IK++GG+ T +VS +TT+LL+G     GR     SK++KA++L TKVI+EDGL  +IR S P     P     PP       ATAA           PA +XXXXXXXXXXXXX            +G SSA    V R+ A   DA   Q+WVDKYKPR S E++GN   V  L+AWL  WE+ HL GA A   +G  +       +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNK+  + E
Sbjct:  365 VPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGRDEATDYIKRHGGRTTQAVSGKTTFLLVGHHC--GR-----SKFRKARELGTKVIDEDGLIALIRASEPN---IPAGAAAPP-------ATAA-----------PASQXXXXXXXXXXXXXXXXXXXXXXXAGAGPSSARPAGVARAPAAAGDASQYQLWVDKYKPRNSVELVGNNTLVDNLRAWLLNWEQVHLRGAAAPTAKGGGSKPKDLSKKAALLSGPPGIGKTSAAHIIAREAGFEVVEMNASDTRNKAGKTSE 629          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: D8UHI8_VOLCA (Replication factor C subunit 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHI8_VOLCA)

HSP 1 Score: 178 bits (451), Expect = 7.730e-44
Identity = 125/311 (40.19%), Postives = 167/311 (53.70%), Query Frame = 0
Query:  283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPG--------QMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNP----GARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
            PPN  KKEVP G  +CL G+ FV++G+LDSL R  A DLIK++GGKVT SVS +T ++++G     G       KY+ A+Q KTK+I+EDGLF +++           S    P   P A A AA   P SI                     +  GGA   + +  T          + +PS  P         Q+WVDKYKPR SSE++GN   V  LK WLE WE+ HL GA A   +G  +       +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNKS+     ++G+  +VI   V
Sbjct:  203 PPNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRG-------KYRDAKQHKTKLIDEDGLFALLK----------ASASFAPAERPAAAAAAAAI-PSSI---------CTSNFGPTAAARAGPGGAGPSAVRKPTGPYT------TPQPSQPPAXXXXXGLYQLWVDKYKPRNSSELVGNNTLVANLKQWLESWEQVHLRGAAAPTAKGGGSKPKDLSKKAALLSGPPGIGKTSAAHIIAREAGFEVVEMNASDTRNKSTKVSDGIAGKQSNVIKEMV 480          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A0D2TH74_GOSRA (Replication factor C subunit 1 n=18 Tax=Gossypium TaxID=3633 RepID=A0A0D2TH74_GOSRA)

HSP 1 Score: 174 bits (441), Expect = 1.090e-42
Identity = 116/286 (40.56%), Postives = 161/286 (56.29%), Query Frame = 0
Query:  278 GGRMAPPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLG-GAGAKPPQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKS 562
            G R  PP++G+KEVP GA +CL G  FV+SG LDSL RE A DLIK+YGG+VTGSVS +T YLL    +        G K  KA++L TK + EDGLF MIR SN   G++P+ G+    SN      +AVT   S+PKK P                         +K    S + A+K  +  + S  P   W +KY+P+  +E+ GN   VK+L  WL  W +  LG G+  K  +  D+   +A LLSG PG+GK+++A LV++ +G+   E+NASD+R K+
Sbjct:  219 GERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEAEDLIKRYGGRVTGSVSKKTNYLLCDEDIG-------GRKSSKAKELGTKFLTEDGLFDMIRASN--HGKAPLKGQ----SN-----KSAVTVAPSLPKKSPQQTEVKATL----------------TKSPSPSVSSAKKRGQPVQHSSLP---WTEKYRPKVPNEITGNQSLVKQLHDWLTQWNKQFLGTGSKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQTIEVNASDSRGKA 467          
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Match: A0A150GSV0_GONPE (Replication factor C subunit 1 n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GSV0_GONPE)

HSP 1 Score: 172 bits (437), Expect = 6.390e-42
Identity = 125/306 (40.85%), Postives = 162/306 (52.94%), Query Frame = 0
Query:  283 PPNEGKKEVPTGAEECLVGKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGRPPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNPYAKATAAVTNPYSIPKKPPAGRXXXXXXXXXXXXXSAVGGADRGSKKSGTSSAEARKVRRSAKPSDAP-GQMWVDKYKPRASSEVMGNGGQVKKLKAWLECWERWHLGGAGAKPPQGKDNPGA------RAALLSGVPGVGKSSTATLVAREMGYHVTELNASDTRNKSS-----LSGELESVIGNQV 576
            PPN G K+VP G  +CL G+ FV+SGVLDSL R  A  LI+++GGKVT SVS RT +LL+G     GR     SKY+ A+Q  TK+I+EDGLF +IR S P   +     +PPP + P +          S P    A R             S              ++     +  +A  S     Q+WVDKYKP+ S E++GN   V  LK WLE WE  HL   GA PP  K           +AALLSG PG+GK+S A ++ARE G+ V E+NASDTRNKS      ++G+  +VI   V
Sbjct:  360 PPNYGNKDVPRGHPDCLTGRTFVMSGVLDSLMRSDADALIRRHGGKVTQSVSGRTAFLLVGHNC--GR-----SKYRGAKQHGTKIIDEDGLFALIRASEPFAPKD----QPPPAAAPASXXXXXXQ--XSQPSSQAASRAGPAAISATGFFGSGAXXXXXXXPSGSRAAPPPASLGGAAGGSGGQLNQLWVDKYKPKNSVELVGNNTLVANLKQWLESWEGVHL--RGAAPPTAKGGGSKPKDLTKKAALLSGPPGIGKTSAAHIMAREAGFEVVEMNASDTRNKSGKVSDGIAGKQSNVIKEMV 650          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16643.4172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI6.250e-10962.04Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A8J4D1N3_9CHLO1.550e-4641.27Replication factor C subunit 1 n=1 Tax=Volvox reti... [more]
A0A2K3D450_CHLRE2.630e-4647.26Replication factor C subunit 1 n=2 Tax=Chlamydomon... [more]
A0A8J4GSG1_9CHLO3.430e-4641.27BRCT domain-containing protein n=5 Tax=Volvox reti... [more]
A0A8J4ARP4_9CHLO4.500e-4642.63Replication factor C subunit 1 n=1 Tax=Volvox afri... [more]
A0A835T5C5_CHLIN8.670e-4646.28Replication factor C subunit 1 n=1 Tax=Chlamydomon... [more]
A0A836BBT5_9CHLO1.160e-4547.78Replication factor C subunit 1 n=1 Tax=Chlamydomon... [more]
D8UHI8_VOLCA7.730e-4440.19Replication factor C subunit 1 n=1 Tax=Volvox cart... [more]
A0A0D2TH74_GOSRA1.090e-4240.56Replication factor C subunit 1 n=18 Tax=Gossypium ... [more]
A0A150GSV0_GONPE6.390e-4240.85Replication factor C subunit 1 n=1 Tax=Gonium pect... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 296..381
e-value: 1.9E-11
score: 54.0
IPR001357BRCT domainPFAMPF00533BRCTcoord: 297..378
e-value: 4.8E-13
score: 49.3
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 294..379
score: 12.7
NoneNo IPR availableGENE3D3.40.50.300coord: 469..576
e-value: 5.5E-26
score: 93.7
NoneNo IPR availablePANTHERPTHR23389:SF6REPLICATION FACTOR C SUBUNIT 1coord: 42..574
NoneNo IPR availablePANTHERPTHR23389CHROMOSOME TRANSMISSION FIDELITY FACTOR 18coord: 42..574
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 278..381
e-value: 5.3E-30
score: 105.5
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 296..379
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 526..562
e-value: 1.2E-6
score: 28.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 470..572

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16643contigH-elongata_contig16643:260..5263 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16643.4172.1mRNA_H-elongata_contig16643.4172.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16643 260..5263 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16643.4172.1 ID=prot_H-elongata_contig16643.4172.1|Name=mRNA_H-elongata_contig16643.4172.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=576bp
DEEEEEEDSHAVIEVVPSPAKQSRRAAAPSSPAARKKKRGAEEALSTVSP
AASSVSKSRPSRRNATQKVNYREDDGEEDGVDNDDDEEDEDDSFSDQEDQ
SDEEEDSSDADVFEDEVDDVAESKRSSSSSARKRKSSSHLSSAKMASAVR
KMPATKKRMKVVNISDEDDEDKSEDDVGEKKKLRQKDEGKKSTQLSQSRA
SSTGVASAKLKPKDGAKEVDLGGTSSDEDSPPPVRKPSRADRAKLSPASS
VADKPGSAKKQPASGSGSGVFRPPWRGGGRMAPPNEGKKEVPTGAEECLV
GKVFVVSGVLDSLGREAAADLIKQYGGKVTGSVSSRTTYLLLGSVLDDGR
PPEEGSKYKKAQQLKTKVINEDGLFKMIRDSNPKGGQSPVSGKPPPISNP
YAKATAAVTNPYSIPKKPPAGRGKPPAPANPYGAASAVGGADRGSKKSGT
SSAEARKVRRSAKPSDAPGQMWVDKYKPRASSEVMGNGGQVKKLKAWLEC
WERWHLGGAGAKPPQGKDNPGARAALLSGVPGVGKSSTATLVAREMGYHV
TELNASDTRNKSSLSGELESVIGNQV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
IPR036420BRCT_dom_sf
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase