prot_H-elongata_contig16560.4132.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16560.4132.1
Unique Nameprot_H-elongata_contig16560.4132.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
[Close]
BLAST of mRNA_H-elongata_contig16560.4132.1 vs. uniprot
Match: D7FZ47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ47_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.990e-20
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 0 
Query:   19 KLAKKKQRCWSFVVTGINRNGPEKKKSDVLASFRERYTAVKKLTLSPA---RGPDTGNINTWEGVRAVVQFIGPQPSQGPGTLLRQLLSGTSVEAVPIILGRGRK 120
            + A++KQRCW F V G+  N  E    ++LAS RERYT VK+L + PA   +        +   V   VQF GPQPS+GPG LL  LL G SV+A P+ L RGRK
Sbjct:   36 RTARRKQRCWLFQVDGVTSNASE---VELLASIRERYTTVKRLVVRPAATSKDAVAAADGSPRNVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRK 137
[Close]
BLAST of mRNA_H-elongata_contig16560.4132.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.480e-15
Identity = 57/140 (40.71%), Postives = 73/140 (52.14%), Query Frame = 0 
Query:    1 MKTDSIVSVSKGPT----SRRPKLAKKKQRCWSFVVTGINRNGPEKKKSDVLASFRERYTAVKKLTLSPA------RGPDTGNINTWE----------GVRAVVQFIGPQPSQGPGTLLRQLLSGTSVEAVPIILGRGRK 120
            M T S  + S  PT    S RP   ++KQR W F + GI  +  E  + D+  + RERYT VK+L L  A       G +  + +T +          GV   +QF GPQPS+G G LL  LL GTSVEA P+ L RGRK
Sbjct:    1 MATPSSDTPSSSPTGGAGSMRP--VRRKQRGWVFKIDGIANH--EMTEEDLFFAVRERYTTVKRLALKNASPGPASEGAEPASKSTHDRVGFQAAVAGGVLVEIQFAGPQPSEGCGALLCHLLRGTSVEARPVELPRGRK 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16560.4132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ47_ECTSI1.990e-2047.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ6_9PHAE9.480e-1540.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16560contigH-elongata_contig16560:3172..5878 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16560.4132.1mRNA_H-elongata_contig16560.4132.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16560 3172..5896 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16560.4132.1 ID=prot_H-elongata_contig16560.4132.1|Name=mRNA_H-elongata_contig16560.4132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MKTDSIVSVSKGPTSRRPKLAKKKQRCWSFVVTGINRNGPEKKKSDVLAS
FRERYTAVKKLTLSPARGPDTGNINTWEGVRAVVQFIGPQPSQGPGTLLR
QLLSGTSVEAVPIILGRGRKP
back to top