prot_H-elongata_contig16558.4129.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16558.4129.1
Unique Nameprot_H-elongata_contig16558.4129.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length335
Homology
BLAST of mRNA_H-elongata_contig16558.4129.1 vs. uniprot
Match: D7G928_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G928_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.870e-66
Identity = 158/341 (46.33%), Postives = 191/341 (56.01%), Query Frame = 0
Query:    8 REAGSLPEVAERAEYILLRDSKFKFHAPAWSGENHDKRQDILLREGLNNPKKSSLLGIGTADLASAGVEDSFSKAIYDPVKACAVEGLIETSLPGRYTPRKI--AARPTPTDGSNAP--LTSQTYSGW-PFPSTAALGTVFRVFPNGLKGQCNTFPHRTGANVPGIAPLKRLSGSKSAPTLRQQPTAPDV---SPSSTSQSLHNRSSGGSGSEKALGPREPGNLSRSASVDKIQVFPDATVGRSYNGEGYRHSHGHSRRGTQKSSRLRSGVEAIATSESARVRSPAKLNFLTTASSNDHLPTGKSPV--------LPRTTTPAQRRDSNQLALDFAAVRSL 332
            RE GSL EVAERAEY+LLRDS++KFHAPAWSG+NHD+RQD+L REGLN PKKS+LLG+GTADLASAG  D FSK+IYDP K CAVEGL+ET  PGRYTPRK+  A R       + P     Q  SG     S  AL TVFRV PNGL G  +T   R GA V GIAP KRL GS+S PT+R      +V   +P   S  + + S GG GS +  G    G   R A     +    AT G +  G         SR  T+             T   AR  +     F+   +S +   T +SP         L R  +PA+RR ++QL LD A +RSL
Sbjct:   84 RETGSLSEVAERAEYLLLRDSEYKFHAPAWSGKNHDERQDLLQREGLNKPKKSTLLGVGTADLASAGANDMFSKSIYDPAKTCAVEGLVETCFPGRYTPRKVTSARRAAAASRDDTPPLRQGQEKSGQRSCSSPGALDTVFRVVPNGL-GNHSTVGGRGGATVAGIAPCKRLCGSRSTPTIRSPENKAEVGTGTPLRKSSPMRSPSPGG-GSRRHTGSGGEGG--RGAGSVFAERLLSATSGSARRG---------SRGLTRXXXXXXXXXXXXXTQGVARATTAGTEGFVKKTASPEDC-TRRSPGEGGPGSARLSRGQSPAERRSNDQLTLDLATIRSL 410          
BLAST of mRNA_H-elongata_contig16558.4129.1 vs. uniprot
Match: A0A7S4DG49_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG49_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 7.370e-16
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0
Query:    7 QREAGSLPEVAERAEYI--LLRDSKFKFHAPAWSGENHDKRQDILLREGLNNPKKSSLLGIGTADLASAGVEDSFSKAIYDPVKACAVEGLIETSLPGRYTPRKIAARP 113
            +R  G   +  ER  Y   LL  S  +FH    SGE HD+RQD+L+REGL  PK+SS+LG G  D+ S GVED  +K+ Y P +   VEG  E +  GR+TP +    P
Sbjct:   10 KRIVGDHRDHPERRRYQQGLLMHSHSRFHRQPPSGEQHDRRQDVLVREGLVAPKQSSVLGYGRRDVYSYGVEDQLAKSNYCPQEKIKVEGHFERNRGGRWTPGRTGMYP 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16558.4129.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G928_ECTSI2.870e-6646.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DG49_HETAK7.370e-1644.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16558contigH-elongata_contig16558:5892..7333 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16558.4129.1mRNA_H-elongata_contig16558.4129.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16558 5892..7333 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16558.4129.1 ID=prot_H-elongata_contig16558.4129.1|Name=mRNA_H-elongata_contig16558.4129.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=335bp
MPRFVSQREAGSLPEVAERAEYILLRDSKFKFHAPAWSGENHDKRQDILL
REGLNNPKKSSLLGIGTADLASAGVEDSFSKAIYDPVKACAVEGLIETSL
PGRYTPRKIAARPTPTDGSNAPLTSQTYSGWPFPSTAALGTVFRVFPNGL
KGQCNTFPHRTGANVPGIAPLKRLSGSKSAPTLRQQPTAPDVSPSSTSQS
LHNRSSGGSGSEKALGPREPGNLSRSASVDKIQVFPDATVGRSYNGEGYR
HSHGHSRRGTQKSSRLRSGVEAIATSESARVRSPAKLNFLTTASSNDHLP
TGKSPVLPRTTTPAQRRDSNQLALDFAAVRSLNL*
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