prot_H-elongata_contig165363.4116.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig165363.4116.1
Unique Nameprot_H-elongata_contig165363.4116.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.730e-36
Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            KADPCVFRK+V+    +++ ++VDDIL    D+   ++  A L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S IPAT G          G   E EE  ++P REA+G++MW  T +RPD + AV AVAR    P   H  A+ KI+ YL  T+D GI
Sbjct:  199 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 369          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6A4DAE2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DAE2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.500e-36
Identity = 75/180 (41.67%), Postives = 112/180 (62.22%), Query Frame = 0
Query:    2 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDI--PATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            ADPCV+ +   GE E +V ++VDD+L  ++ KA +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++KF  +       P    V  L+KADEP   E+K +M+  PYR  VG+LM+    TRPD + AV+ ++RF ENPG  H  A +K+++YLL TKD GI
Sbjct:    8 ADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPPEPAV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 185          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.010e-35
Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            KADPCVFRK+V+    +++ ++VDDIL    D+   ++  A L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDV+  S IPAT G          G   E EE  ++P REA+G++MW  T +RPD + AV AVAR    P   H  A+ KI+ YL  T+D GI
Sbjct:  135 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADL-------GPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 305          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6A3G781_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3G781_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.640e-35
Identity = 76/180 (42.22%), Postives = 112/180 (62.22%), Query Frame = 0
Query:    2 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVK--KGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            ADPC + +   GE E +V ++VDD+L  ++ KA +    A + +KF+ KD+G AR+ +G  I  + + R L I Q+ Y ES+++KF  +  K    P   GV  L+KADEP   E+K +M+  PYR  VG+LM+    TRPD + AV+ ++RF ENPG  H  A +K+++YLL TKD GI
Sbjct:   34 ADPCDYTRG-EGEDECIVCLYVDDMLIASRQKAAIVSVKAGIAEKFRTKDLGRARFILGIEIDYDMERRTLDISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 211          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.750e-35
Identity = 77/180 (42.78%), Postives = 113/180 (62.78%), Query Frame = 0
Query:    2 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDI--PATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            ADPCV+ +   GE E +V ++VDD+L  ++ KA +    A + +KF++KDMG AR+ +G  I  + + R L I Q+ Y ES+++KF  +       P   GV  L+KADEP   E+K +M+  PYR  VG+LM+    TRPD + AV+ ++RF ENPG  H  A +K+++YLL TKD GI
Sbjct:   58 ADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 235          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.800e-35
Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            KADPCVFRK+V+    +++ ++VDDIL    D+   ++  A L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S IPAT G          G   E EE  ++P REA+G++MW  T +RPD + AV AVAR    P   H  A+ KI+ YL  T+D GI
Sbjct:  912 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1082          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.890e-35
Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            KADPCVFRK+V+    +++ ++VDDIL    D+   ++  A L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S IPAT G          G   E EE  ++P REA+G++MW  T +RPD + AV AVAR    P   H  A+ KI+ YL  T+D GI
Sbjct: 1291 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1461          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.910e-35
Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            KADPCVFRK+V+    +++ ++VDDIL    D+   ++  A L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S IPAT G          G   E EE  ++P REA+G++MW  T +RPD + AV AVAR    P   H  A+ KI+ YL  T+D GI
Sbjct: 1311 KADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1481          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.920e-35
Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 0
Query:    1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            KADPCVFRK+V+    +++ ++VDDIL    D+   ++  A L +KF  K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FDVK  S IPAT G          G   E EE  ++P REA+G++MW  T +RPD + AV AVAR    P   H  A+ KI+ YL  T+D GI
Sbjct: 1454 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1624          
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.360e-35
Identity = 76/180 (42.22%), Postives = 113/180 (62.78%), Query Frame = 0
Query:    2 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSD--IPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 179
            ADPCV+ +   GE E +V ++VDD+L  ++ KA +    A + +KF++KD+G AR+ +G  I  + + R L I Q+ Y ES+++KF  +       P   GV  L+KADEP   E+K +M+  PYR  VG+LM+    TRPD + AV+ ++RF ENPG  H  A +K+++YLL TKD GI
Sbjct:   89 ADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL3_9PHAE4.730e-3643.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DAE2_9STRA7.500e-3641.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.010e-3542.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3G781_9STRA2.640e-3542.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4F359_9STRA2.750e-3542.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE3.800e-3543.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.890e-3543.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.910e-3543.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.920e-3543.02Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6G0MK94_9STRA6.360e-3542.22Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 12..91
e-value: 2.5E-13
score: 50.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165363contigH-elongata_contig165363:5..541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165363.4116.1mRNA_H-elongata_contig165363.4116.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig165363 5..541 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig165363.4116.1 ID=prot_H-elongata_contig165363.4116.1|Name=mRNA_H-elongata_contig165363.4116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLK
DMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSG
VPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVA
RFCENPGPAHKKAVMKIMQYLLHTKDWGI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2