prot_H-elongata_contig16425.4061.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16425.4061.1
Unique Nameprot_H-elongata_contig16425.4061.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length417
Homology
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: D7FNC2_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC2_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 3.000e-55
Identity = 174/451 (38.58%), Postives = 224/451 (49.67%), Query Frame = 0
Query:    1 QVALAKSDWDLDRASAGVLSTLE-AYDAERPPTPKPCRHLLQGGKCLRSDCAFSHDFASTTXXXXXXXXXXXXXXXXXXXXLDVPLQGQESARVAYELE---VCEAICVRLNNWIAESRCS-----PRVLPYATRLK-----EHEGGSGSDQATEAPSVRGHGHDRSEDGMLDVFATEDFPLLAPKLRASSTSLGSSTGPKKEEAFEPGNRCRD---VLLDAVRTKPASKKRNPGKRGPRGRKTRYAAVNIQALMR-ANPTSGNDGPTDSLNSYSSETASTVTAHEHTQDRPGRQCASGLTQD--AAATTVTSRPTCGISFAEAVGST-----------RQGAVVAE---ALERRDGGDRGNDGTRMPVGSWVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            QVALAKSDW+LDRASA VL  L+ A DA      KPCRHLL  G+C RSDC FSHDFA TT                     D+ +  + +     + E     E           E + S     P +   ATRL      +  G  GS       S +      + D +  V A  D  +  P++   S +       ++EEA E  N  +D   VLL AV + P  ++R  G++G RGRKTR+ AVN+QAL++  +P +    P ++ +                     R+ +SG+ Q      +++++ P  GISFA+ VGS+           R  AV      A  R  G DR         G WVSTG AV  QY+ AR++A ELARARNK FTSATEAFRRG G  ARDLARRGRELN  MKEKH+QAA  IF +RNPGDQV
Sbjct:  160 QVALAKSDWNLDRASAAVLLALQIACDASL--AVKPCRHLLLDGECRRSDCTFSHDFA-TTPCRYWLQGCCVNSSDDCYFMHDLVVPDEAAGFSPPDCEPGITAEESXXXXXXXXDERQLSGVDQFPSLPSTATRLSPPIDGDMVGTEGSAPYQTPSSTKNGVSGVALDTIAAVAAPSDAGVSGPRIGDDSPAT------EREEAEEGWNEKKDDKDVLLAAV-SAPKGQQRGRGRKGGRGRKTRFTAVNLQALLKPGSPHAKTSTPENAFHP--------------------REMSSGIAQQDGGGGSSLSAEP--GISFADVVGSSSCPAGSANGLGRAAAVACPSPYAWRRAVGDDRYPPAVVGGGGEWVSTGDAVGKQYQQAREDAAELARARNKFFTSATEAFRRGDGLLARDLARRGRELNFRMKEKHQQAAEYIFGARNPGDQV 578          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.110e-42
Identity = 156/415 (37.59%), Postives = 188/415 (45.30%), Query Frame = 0
Query:   34 KPCRHLLQGGKCLRSDCAFSHDFASTTXXXXXXXXXXXXXXXXXXXX-LDVPLQ-------GQESARVAYELEVCEAICVRLNNWIAESRCS-----PRVLPYATRLKEHEGGSGSDQATEAPSVRGHGHDRSEDGM-LDVFATEDFPLLAPKLRASSTSLGS-STGPKKEEA--FEPGNRCRDVLLDAVRTKPASKKRNPGKRGPRGRKTRYAAVNIQALMRANPTSGNDGPTDSLNSYSSETASTVTAHEHTQDRPGRQCASGLTQDAAATTVTSRPTCGISFAEAVGSTR--------QGAVVAEALERRDGGDRGNDGTRMPV------GSWVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            KPCRHLL  G+C RSDCAFSHDFA+T                      L VP +       G E  R+A E           ++   E + S     P +    TRL    G         AP            G+ LD  A    P  A     S   +G  S   K+EEA  +       DVLL AV + P   +R  G++G RGRKTR+ AV++QAL++                  S  A T T       R   +  SG+ Q       +     G+SFA+ VGS+          G     A +  D   R     R P       G WVSTG AV  QYE AR++A ELARARNK FTSATEAF+RG G  ARDLARRGRELN  MKEKHRQAA  IF +RNPGDQV
Sbjct:  170 KPCRHLLLDGECRRSDCAFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLVVPNEEAGLSPPGSEPGRMAEESGGGG------DSGSDERQLSGVDQFPSLPSTTTRLPPPIGSEIVGTEGSAPFQTPSSTKNGVSGVALDTIAAVAAPSAAG---VSGPRIGDDSPATKREEAVGWNEKKDNEDVLLAAV-SAPKGPQRGRGRKGGRGRKTRFTAVDLQALLKPG----------------SPHAKTSTPENVFHPR---EVGSGIAQQDGTGGASLSAEPGMSFADVVGSSSCLAGSTNGLGRAAEVACQSPDAWRRAIGDERYPPAVVGGGGEWVSTGDAVGKQYEQAREDAAELARARNKFFTSATEAFQRGDGLLARDLARRGRELNFRMKEKHRQAAEYIFGARNPGDQV 555          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: A0A836CII3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII3_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.840e-17
Identity = 118/398 (29.65%), Postives = 157/398 (39.45%), Query Frame = 0
Query:   34 KPCRHLLQGGKCLRSDCAFSHDFASTTXXXXXXXXXXXXXXXXXXXXLDVPLQGQESARVAYELEVCEAICVRLNNWIAESRCSPRVLPYATRLKEHEGGSGSDQATEAPSVRGHGHDRSEDGMLDVFATEDFPLLAPKLRASSTSLGSSTGPKKEEAFEPGNRCRDVLLDAVRTKPASKKRNPGKRGPRGRKTRYAAVNIQALMRAN-PTSGNDGPTDSLNSYSSETASTVTAHEHTQDRPGRQC----ASGLTQDAA-----ATTVTSRPTCGISFAEAVGSTRQGAVVAEALERRDGGDRGNDGTRMPVGS----WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            +PCRH L G +CLR DC F+HDFA+T                     L +          A+    C A+   L+  +A  R +P  L  ATR+                +  G       +G   +F  +    L P    ++ +  SS  P  EE         D  L      P  +      RG     +R  ++  Q +   + P  G+ G   S     S T                      A G+ Q A         V S  + G SFA  VGS      +  +  RR   D      R+  G+    WV TG AVA QY+ AR EA ELAR+RN  F SAT A+R G  K+A  LA +GRELN  MKE+HR AA  I+ +RNP  QV
Sbjct:  472 QPCRHYLSG-ECLRRDCMFAHDFATTICRYWLQTAALYATAFERMCRLSL----------AHVSSRCGALL--LSAVVARCRRAPPAL--ATRV--------------FAAAWGRARGTCRNGFTCLFVHD----LEPADAVAAGAAASSVSPTPEE---------DEPLPLSGDAPVYQ------RGSSAATSRKNSIEFQGVFSEDFPALGSGGSQSSPAKTPSRTXXXXXXXXXXXXXXXXXXXXSPAGGVLQLAVEGLSYGPQVPSPVSSGKSFAAVVGSGAS-PQLQPSSSRRGSADSKRGAGRVRGGANSNGWVQTGDAVAAQYKTARSEAAELARSRNGYFMSATRAYRGGDAKSASALAAKGRELNGLMKERHRAAARCIYDARNPQQQV 820          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: A0A3M6VB56_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.610e-11
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  338 WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            WVSTG AVA QY   R++A E+A ARNK F  AT+A+R G    A+ L+++G E N +MK  H  AAS IF SRNP +Q+
Sbjct:  429 WVSTGQAVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNAKMKHFHFLAASDIFESRNPPNQL 508          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: A0A2P4XU03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XU03_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.430e-10
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
Query:  330 GTRMPVGS-WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            G+   +G+ WVSTG +VA QY   R++A ++A ARNK F  AT+A+R G    A+ L+++G E N +MK  H  AAS IF SRNP +Q+
Sbjct:  228 GSNESIGTKWVSTGQSVATQYLELREQAYQMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNTKMKHFHFLAASEIFESRNPPNQL 316          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: A0A0P1AEJ2_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AEJ2_PLAHL)

HSP 1 Score: 73.9 bits (180), Expect = 1.620e-10
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  338 WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            WV+TG +V+ QY   R++A E+A ARNK F  AT+A+R G    A+DL+R+G E N +MK  H  AAS IF SRNP +Q+
Sbjct:  396 WVTTGESVSSQYLELREQAHEMACARNKCFMGATQAYRNGNKALAKDLSRQGHEYNVKMKNFHFLAASEIFESRNPPNQL 475          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: D0MT46_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 73.9 bits (180), Expect = 1.700e-10
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  338 WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            WVSTG +VA QY   R++A E+A ARNK F  AT+A+R G    A+ L+++G E N +MK  H  AAS IF SRNP +Q+
Sbjct:  429 WVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNAKMKNFHFLAASEIFESRNPPNQL 508          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: G4ZFB7_PHYSP (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=G4ZFB7_PHYSP)

HSP 1 Score: 73.6 bits (179), Expect = 2.280e-10
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  338 WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            WVSTG +VA QY   R++A E+A ARNK F  AT+A+R G    A+ L+++G E N +MK  H  AAS IF SRNP +Q+
Sbjct:  435 WVSTGQSVATQYLELREQAYEMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNVKMKNFHFLAASEIFESRNPPNQL 514          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: A0A225VSJ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VSJ6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.790e-10
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0
Query:  338 WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFASRNPGDQV 417
            WVSTG  VA QY   R++A ++A ARNK F  AT+A+R G    A+ L+++G E N +MK  H  AAS IF SRNP +Q+
Sbjct:  380 WVSTGQNVATQYLELREQAYQMACARNKCFMGATQAYRNGNKALAKGLSKQGHEYNTKMKNFHFLAASEIFESRNPPNQL 459          
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Match: D8TPR6_VOLCA (Smr domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TPR6_VOLCA)

HSP 1 Score: 70.9 bits (172), Expect = 1.930e-9
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0
Query:  338 WVSTGTAVALQYEGARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKHRQAASAIFA 409
            WVSTG AV+ QY   R+EA  LARARN+ F  AT A+  G    A+ L RRGRELNE MK  H  AA  IFA
Sbjct:  547 WVSTGEAVSAQYAEERREAAMLARARNQCFQQATLAYLSGNKALAKQLGRRGRELNEAMKAAHAAAARRIFA 618          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16425.4061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FNC2_ECTSI3.000e-5538.58C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKG2_9PHAE4.110e-4237.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CII3_9STRA1.840e-1729.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3M6VB56_9STRA9.610e-1152.50Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2P4XU03_9STRA1.430e-1047.19Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A0P1AEJ2_PLAHL1.620e-1051.25Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
D0MT46_PHYIT1.700e-1051.25Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
G4ZFB7_PHYSP2.280e-1051.25Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A0A225VSJ6_9STRA8.790e-1050.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
D8TPR6_VOLCA1.930e-956.94Smr domain-containing protein n=1 Tax=Volvox carte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 382..402
NoneNo IPR availableGENE3D4.10.1000.10coord: 23..101
e-value: 6.6E-8
score: 34.4
NoneNo IPR availablePANTHERPTHR46651:SF1POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7coord: 252..413
NoneNo IPR availablePANTHERPTHR46651FAMILY NOT NAMEDcoord: 252..413
IPR013899Domain of unknown function DUF1771SMARTSM01162DUF1771_2coord: 348..413
e-value: 3.4E-19
score: 79.8
IPR013899Domain of unknown function DUF1771PFAMPF08590DUF1771coord: 349..412
e-value: 5.3E-18
score: 65.1
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 57..81
e-value: 1.0
score: 16.3
coord: 32..56
e-value: 2.8
score: 12.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 55..82
score: 12.23
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 30..54
score: 9.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16425contigH-elongata_contig16425:30..3638 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16425.4061.1mRNA_H-elongata_contig16425.4061.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16425 30..3638 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16425.4061.1 ID=prot_H-elongata_contig16425.4061.1|Name=mRNA_H-elongata_contig16425.4061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=417bp
QVALAKSDWDLDRASAGVLSTLEAYDAERPPTPKPCRHLLQGGKCLRSDC
AFSHDFASTTCRYWLHGRCLLSSDCVFRHDLDVPLQGQESARVAYELEVC
EAICVRLNNWIAESRCSPRVLPYATRLKEHEGGSGSDQATEAPSVRGHGH
DRSEDGMLDVFATEDFPLLAPKLRASSTSLGSSTGPKKEEAFEPGNRCRD
VLLDAVRTKPASKKRNPGKRGPRGRKTRYAAVNIQALMRANPTSGNDGPT
DSLNSYSSETASTVTAHEHTQDRPGRQCASGLTQDAAATTVTSRPTCGIS
FAEAVGSTRQGAVVAEALERRDGGDRGNDGTRMPVGSWVSTGTAVALQYE
GARKEAVELARARNKLFTSATEAFRRGQGKTARDLARRGRELNEEMKEKH
RQAASAIFASRNPGDQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013899DUF1771
IPR000571Znf_CCCH