prot_H-elongata_contig16399.4043.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16399.4043.1
Unique Nameprot_H-elongata_contig16399.4043.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length196
Homology
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.170e-31
Identity = 59/163 (36.20%), Postives = 99/163 (60.74%), Query Frame = 0
Query:   22 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDK 184
            +G+K  +  K  ++GK+EK+K +LVA+G WQ+  V Y   + P P++ SI+++L   + K   L H+D KQA+    +DE++++++P         +    +AI+GL  +GR W     D +   G EQ K DPC+FRK+VD  V +++V++VDDIL   +D+
Sbjct:  416 VGSKWCFSWKTNKEGKIEKFKARLVARGLWQIPNVDYFHSFSPCPLSVSIKLMLAVASKKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE 578          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.870e-31
Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 0
Query:   31 KVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAA 192
            K  ++GKV+K+K  LVA+GF Q+  V +     P P +ASI+++L     K   L H+D KQA+    +DE++++ IP  Y      +    +AI+GL Q+GR W     D +   G EQ K DPC+FRK+VD  V +V+V++VDDIL   +D+   +  A+
Sbjct:   10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDEDCEELLAS 171          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.120e-29
Identity = 61/171 (35.67%), Postives = 100/171 (58.48%), Query Frame = 0
Query:   22 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAA 192
            IG+K ++  K  + G +  +K ++VA+GF Q+ G+ +       P  AS++ ++     K  +L H+D KQA++   + E++Y+  PE      G V  + +A++GL Q+GR W  +  D +   G EQ + DPC+FRKVVDGEV  ++V++VDDIL  A +    D FA+
Sbjct:   61 IGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFAS 231          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.480e-29
Identity = 60/171 (35.09%), Postives = 101/171 (59.06%), Query Frame = 0
Query:   22 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAA 192
            IG++ ++  K  + G +  +K ++VA+GF Q+ G+ +       P  ASI+ ++     K  +L H+D KQA++   ++E++Y+  PE +    G V  + +A++GL Q+GR W  +  D +   G EQ + DPC+FRKVVDGEV  ++V++VDDIL  A +      FA+
Sbjct:  147 IGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREGLFAS 317          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A392PD17_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A392PD17_9FABA)

HSP 1 Score: 117 bits (294), Expect = 5.160e-29
Identity = 66/179 (36.87%), Postives = 101/179 (56.42%), Query Frame = 0
Query:   17 KDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKF-PGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAEL 194
            K K  +G K +Y  K   DG +E+YK +LV  G  QVEG+ Y E + P     +++++L   AAK  E+   D   AFL   + E++Y++ P  ++ F PG V  L K+++GL QA RCW  K+   +   G  Q+  D  +F  +V  EV++VV+V+VDD++    D A + RF A L
Sbjct:   11 KGKKPLGCKWVYKIKHNSDGTIERYKARLVIFGNHQVEGIDYNETFAPVAKMVTVRLVLAVAAAKKWEIHQMDVHNAFLHGDLHEEVYMKPPPGFRTFQPGLVCKLKKSLYGLKQAPRCWFAKLSSALKKFGFRQSCSDYSLFTLLVH-EVQIVVLVYVDDLIVCGNDSAAIQRFKAYL 188          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY)

HSP 1 Score: 121 bits (303), Expect = 7.980e-29
Identity = 69/194 (35.57%), Postives = 113/194 (58.25%), Query Frame = 0
Query:    1 MRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAEL 194
            M   V+  ++ +V   K++ V+G+K ++  K G +GK+EKYK +LVAQGF QV+G+ YTE + P     SI+ LL   A  D E+   D K AFL   +DE++Y++ P  +    G V  L K+++ L QA   W  KV ++  A+G  +++ D  +F K  +G + ++V V+V+D+L  +     +D+  AEL
Sbjct:   17 MLAFVKANLFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAAKLDLEIHQMDVKSAFLNGDLDEEIYMKCPPGHHAKEGIVWKLKKSLYELKQASCEWYKKVREEFEALGFTRSEADHSVFYKNENGAL-MIVAVYVNDMLLFSNSMKGIDQLKAEL 209          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.640e-29
Identity = 61/171 (35.67%), Postives = 100/171 (58.48%), Query Frame = 0
Query:   22 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAA 192
            IG+K ++  K  + G +  +K ++VA+GF Q+ G+ +       P  ASI+ ++     K  +L H+D KQA++   + E++Y+  PE      G V  + +A++GL Q+GR W  +  D +   G EQ + DPC+FRKVVDGEV  ++V++VDDIL  A +    + FA+
Sbjct:  503 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFAS 673          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 9.420e-29
Identity = 61/171 (35.67%), Postives = 101/171 (59.06%), Query Frame = 0
Query:   22 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAA 192
            IG+K ++  K    G +  +K ++VA+GF Q+ G+ +       P  ASI+ ++     K  +L H+D KQA++   + E++Y+ +PE      G V  + +A++GL Q+GR W  +V D +   G EQ + DPC+FRKVVDGEV  ++V++VD+IL  A +    + FA+
Sbjct:  328 IGSKWVFSSKTNGKGLIVDFKARMVARGFSQIPGIDFHHSSSAFPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIENGCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVAADEGEREELFAS 498          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 9.440e-29
Identity = 62/175 (35.43%), Postives = 100/175 (57.14%), Query Frame = 0
Query:   20 LVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAEL 194
            L IG+K ++  K  ++  +  +K ++VA+GF Q+  + +       P  ASI+ ++   + K  +L H+D KQA++   + E LY+  PE      G V  + +A++GL Q+G  W  +  D +   G EQ + DPC+FRKVVDGEV  ++V++VDDIL  A D+   + F A L
Sbjct:   22 LAIGSKWVFSWKTNENDLMVDFKARMVARGFSQIPSIDFHHSSSACPSAASIKTVITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREEFFASL 195          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.340e-28
Identity = 61/171 (35.67%), Postives = 99/171 (57.89%), Query Frame = 0
Query:   22 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAA 192
            IG+K ++  K  + G +  +K ++VA+GF Q+ G+ +       P  ASI+ ++     K  +L H+D KQA++   + E++Y+  PE      G V  + +A++GL Q GR W  +  D +   G EQ + DPC+FRKVVDGEV  ++V++VDDIL  A +    + FA+
Sbjct:  545 IGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFAS 715          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRC6_9PHAE1.170e-3136.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIS9_9PHAE2.870e-3138.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE1.120e-2935.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY81_9PHAE2.480e-2935.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392PD17_9FABA5.160e-2936.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NNP3_9APHY7.980e-2935.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE8.640e-2935.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE9.420e-2935.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMA7_9PHAE9.440e-2935.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.340e-2835.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..194
e-value: 7.6E-32
score: 110.9
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 15..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16399contigH-elongata_contig16399:3671..4258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16399.4043.1mRNA_H-elongata_contig16399.4043.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16399 3143..4267 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16399.4043.1 ID=prot_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGF
WQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGID
EKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQ
AKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2