prot_H-elongata_contig16292.3994.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig16292.3994.1
Unique Name	prot_H-elongata_contig16292.3994.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	187

Homology

[Close]

BLAST of mRNA_H-elongata_contig16292.3994.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 5.620e-28
Identity = 64/148 (43.24%), Postives = 93/148 (62.84%), Query Frame = 0

Query:    1 MSRVQRVTTASMILSFLGLSVLATAAVMPFWDTVSVSGTLFWSINLDEATHVWVMVSIFFMELLAGATMAITFALLVIFRAPELYQVWQLNRRIKFYFILTAIAVLVDLSIGVGGIVYVLHERFKPPLIAATWTARHVHIALDTLVLY 148
            ++RV+  ++ S++   L +S+    A  PFW T  VSGT F   N D+ +  W+ VS FF+E L G  M +  A L++FR  E+ + W+++ RI++YF LT I   V+L++GV G +YV+  R K  LI  TWT RH+HIALDT VLY
Sbjct:   50 LARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLY 197

[Close]

BLAST of mRNA_H-elongata_contig16292.3994.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 2.240e-24
Identity = 57/157 (36.31%), Postives = 94/157 (59.87%), Query Frame = 0

Query:    2 SRVQRVTTASMILSFLGLSVLATAAVMPFWDTVSVSGTLFWSINLDEATHVWVMVSIFFMELLAGATMAITFALLVIFRAPELYQVWQLNRRIKFYFILTAIAVLVDLSIGVGGIVYVLHERFKPPLIAATWTARHVHIALDTLVLYTALAESSPSE 158
            S V+ ++T  ++L FL LS    A  +PFW    +SGT FW +  ++  H +VM+S F +E L G  M +  + L++FR  E+ + W ++  +++YF LT +  + +L++GV G +YV+ +   P L+  +W  R V IALDT+VL++ LA  S  E
Sbjct:   51 SHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDE 207

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig16292.3994.1 vs. uniprot

BLAST of mRNA_H-elongata_contig16292.3994.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LNN1_ECTSI	5.620e-28	43.24	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LNP0_ECTSI	2.240e-24	36.31	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..76
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..50
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 121..186
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 77..95
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 96..120
None	No IPR available	TMHMM	TMhelix		coord: 55..77
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 98..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig16292	contig	H-elongata_contig16292:281..2702 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig16292.3994.1	mRNA_H-elongata_contig16292.3994.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig16292 264..6421 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig16292.3994.1 ID=prot_H-elongata_contig16292.3994.1|Name=mRNA_H-elongata_contig16292.3994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MSRVQRVTTASMILSFLGLSVLATAAVMPFWDTVSVSGTLFWSINLDEAT
HVWVMVSIFFMELLAGATMAITFALLVIFRAPELYQVWQLNRRIKFYFIL
TAIAVLVDLSIGVGGIVYVLHERFKPPLIAATWTARHVHIALDTLVLYTA
LAESSPSEAECSQMTSLRSVPKRVRARASTHPENNV*