prot_H-elongata_contig16282.3986.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16282.3986.1
Unique Nameprot_H-elongata_contig16282.3986.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length701
Homology
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BLAST of mRNA_H-elongata_contig16282.3986.1 vs. uniprot
Match: A0A6H5K9V4_9PHAE (TFIID_20kDa domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.520e-15
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 0 
Query:  645 AAKSMSQMRPLHPVMVPPVEPEPKEAKLTGPMNGVRVAALMEEVDPEFALHHNTEEV 701
            AAKSM+ M+PLHPV+VPPVEPEPKEAKL GPMNG+R+ ALM+EVDP ++LH +TEE+
Sbjct:  383 AAKSMAAMKPLHPVVVPPVEPEPKEAKLVGPMNGMRLPALMKEVDPAYSLHPDTEEL 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16282.3986.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9V4_9PHAE4.520e-1573.68TFIID_20kDa domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 506..540
NoneNo IPR availableCOILSCoilCoilcoord: 549..588
NoneNo IPR availablePANTHERPTHR34403:SF3coord: 364..586
NoneNo IPR availablePANTHERPTHR34403FAMILY NOT NAMEDcoord: 364..586

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16282contigH-elongata_contig16282:1716..7401 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16282.3986.1mRNA_H-elongata_contig16282.3986.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16282 1662..7401 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16282.3986.1 ID=prot_H-elongata_contig16282.3986.1|Name=mRNA_H-elongata_contig16282.3986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=701bp
MALARGQSLASGPLPKDDSSGSRSPKAEMAESHTPAKNLAGENGALQDGS
AMPHGRPEALGGTPAVPAGGRTIFPRPAIMRGKGAIISQRAEQTRHSHAG
IAPQPASAPAVPLQAPANERTSNQNVPKAKDEPPQLLHLQQQLQHQHHFQ
TRQLQNQQQQQQNQQQHQPQHHQAAQQQQQQLRDRDKIQQETSARQTLLC
HTTQQTLLSTQQAQQQPQHQRQQEQNQEQRKRSMLAAPLAPGAVPNYQQR
PNPAVTTAVPAPVASLQVKEAPAAAATVPTSDVRLNEAVKAESAGTGVST
GQHLTAGGYVRPSADGAASAWEAEFKAAKEQAMGQAHVQARARAPQLQSQ
PQARAQAQGQTPVLAPALVPAPVPSLAQAPVQSHIPVQALAQARVQSHIP
LQTQAQKVQAQSQARAVQSQAHSQAQAQAKAQAQAHTQAQANVQVQARTQ
PQTQAQAHAHAHHAQAQQGQTQVQAQQTQAQVQAQAQAQAQAQVQAQAQV
QAQAQVQAQAQAQAQAQAQAKQAQAQAKHAQAQQAQAQQVQSQAQAQAQA
QAQAQAQQAQTQAQQAQAQQAQAQERAANAQAQSHAQQLLVVQQRAQRAA
ASAQGANIMPPPRSVQTPPNAVNPQQQHQRHEQQQQQGSVSGGGAAKSMS
QMRPLHPVMVPPVEPEPKEAKLTGPMNGVRVAALMEEVDPEFALHHNTEE
V
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