prot_H-elongata_contig162762.3980.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig162762.3980.1
Unique Nameprot_H-elongata_contig162762.3980.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length88
Homology
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BLAST of mRNA_H-elongata_contig162762.3980.1 vs. uniprot
Match: A0A6H5J768_9PHAE (PHD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J768_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.530e-42
Identity = 65/80 (81.25%), Postives = 70/80 (87.50%), Query Frame = 0 
Query:    7 ACLHDLPPTAALQCELCPFKGVSAVANTSDGKWVHGHCSSWLLKMDPDQHENMDMSLNPVTDKCETCTPDKCSECIICGQ 86
            AC HDLPPT ALQCELCPFKGVSA+A TSDGKWVHGHCSSWLLKMDPDQHENMDMS+ PV +KC+TC P  CS CIIC +
Sbjct:   75 ACSHDLPPTTALQCELCPFKGVSALALTSDGKWVHGHCSSWLLKMDPDQHENMDMSVIPVPEKCDTCNPHTCSNCIICNK 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162762.3980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J768_9PHAE6.530e-4281.25PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162762contigH-elongata_contig162762:267..1270 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162762.3980.1mRNA_H-elongata_contig162762.3980.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig162762 267..1270 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig162762.3980.1 ID=prot_H-elongata_contig162762.3980.1|Name=mRNA_H-elongata_contig162762.3980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
GGRFCRACLHDLPPTAALQCELCPFKGVSAVANTSDGKWVHGHCSSWLLK
MDPDQHENMDMSLNPVTDKCETCTPDKCSECIICGQG*
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