prot_H-elongata_contig16272.3978.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16272.3978.1
Unique Nameprot_H-elongata_contig16272.3978.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length148
Homology
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.470e-68
Identity = 115/146 (78.77%), Postives = 129/146 (88.36%), Query Frame = 0
Query:    1 MQAEVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQK 146
            MQAE N  ++ LDIEWEIS+AGAP NPPATIQLAAGK VVIFHVLHGQRSVPA+LPD L +LLED KLTKTGVGIKGDCTRL++ YGVEVA A DLRSLAVERKVE+GLRRGLADLCVHLLG +LPK+ TVR+S+WN + LS +QK
Sbjct:  245 MQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.940e-21
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 0
Query:    4 EVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVI-FHVLHG-QRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNT 138
            ++ GNV+GLD EWE S AG   NP +T+QL+        F +  G +++  ++ P  L NLLE+  + K GV I  D T L   YG+EVA   DLR+ A +  VE    R LA +   LLG +LPK+  +R SRW++
Sbjct:  109 QLQGNVLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRSSRWSS 244          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 5.560e-21
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 0
Query:    4 EVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVI-FHVLHG-QRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNT 138
            ++ GNV+GLD EWE S  G   NP +T+QL+        F +  G +++  ++ P  L NLLE+  + K GV I  D T L   YG+EVA   DLR+ A +  VE    R LA +   LLG +LPK+  +R+SRW++
Sbjct:  417 QLQGNVLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETP-SRSLAGMASSLLGRQLPKDPVIRLSRWSS 552          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.210e-16
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 0
Query:    7 GNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLH---GQRSVPADLPDQLANLLEDDKLTK-TGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 145
            G+V+GLD EWE +  GA  NP +T+QL+          LH    + +  + +P  L +LLE+    +  GV +  D + L   YGV+VA   D+R+ A E  VE    R LA +   L+G  LPK+ T+R+SRW+   L+ EQ
Sbjct:  152 GDVLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETS-SRSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQ 293          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.900e-16
Identity = 54/141 (38.30%), Postives = 75/141 (53.19%), Query Frame = 0
Query:    7 GNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVV-IFHVLHG-QRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 145
            G+V+G+D EWE    G+      T+QLA       +FH+  G +R+ P+     L  LL D  +TK GV +KGD +RL   YGVE     DLRS A    V++  R  LA +    LG  L K  +VR SRW+  +L++ Q
Sbjct:   87 GHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A1E5VPQ2_9POAL (3'-5' exonuclease domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPQ2_9POAL)

HSP 1 Score: 79.3 bits (194), Expect = 1.810e-14
Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = 0
Query:   27 PPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLR-RGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 145
            P A +QL  G+  ++F +L         +PD L   L DD++T  GVG+  D  +L   YG+EVARA DLR LAV       L   GL  L   ++G ++ K   VR+S W+  +LSK Q
Sbjct:  252 PVAVLQLCVGRRCLVFQILRADY-----VPDALVGFLADDRITFVGVGVHNDAAKLREGYGLEVARAVDLRRLAVVELGNPALHGAGLQALVWEVMGLQMEKPHHVRVSAWDARRLSKAQ 366          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A7S0LL15_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LL15_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 2.160e-13
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 0
Query:   10 IGLDIEWEISS-AGAPLNPPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQKA 147
            +G DIEW+++  AG      AT+QLA     ++      Q S     P  LA ++ D ++ KTGVGI+ D  +L+  YGV  A   DL  +A     +      LADL   +LG RLPK   +R+S W   +LS EQ A
Sbjct:  169 VGFDIEWKVTFVAGETPRKVATLQLAHESSCLVL-----QLSAMPHFPANLAVIMGDSRIIKTGVGIRNDALKLARDYGVRCAGILDLGRVAQVVLPDGAAPWSLADLSERVLGRRLPKAPQLRLSNWE-ARLSPEQVA 301          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: UPI00081150E8 (exonuclease 3'-5' domain-containing protein 2-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081150E8)

HSP 1 Score: 72.0 bits (175), Expect = 1.200e-12
Identity = 52/144 (36.11%), Postives = 72/144 (50.00%), Query Frame = 0
Query:    4 EVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLA--VERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 145
            ++   V+G D EW   + G    P A +QL++ K +     L   + +P DL D    LLEDDK+ K GVG + D  +L+  YGV VA   DLR LA  V +K E     GLA +   LL   L K   +  S W    L+++Q
Sbjct:    2 QIXYKVLGFDCEWV--TVGGKRRPVALLQLSSQKGLCALFRLCNLQQIPKDLRD----LLEDDKVIKVGVGTQDDAHKLAYDYGVGVASTLDLRYLAALVNQKPE-----GLAKMAKSLLDVHLDKHWRLSCSDWEAKVLNEKQ 134          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A0A0L9B9_CUCSA (3'-5' exonuclease domain-containing protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0L9B9_CUCSA)

HSP 1 Score: 73.2 bits (178), Expect = 1.570e-12
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 0
Query:   10 IGLDIEWEIS-SAGAPLNPPATIQLAA-GKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 145
            IG DIEW  S   G P    A +QL        + H++H      + +P  L  LLEDD L+K GVGI  D +++   Y V V    ++  LA ++   V  + GL  L   L+   L K   +R+  W    LSK+Q
Sbjct:  149 IGFDIEWRPSFKRGVPPGKAAVMQLCLENSECHVMHIIH------SGIPQSLQALLEDDTLSKAGVGIASDASKVFKEYNVSVKPLNEISDLANQKLAGVPKKWGLRALTETLISKELQKPDRIRLGNWEVAVLSKDQ 280          
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Match: A0A5J9VHV3_9POAL (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9VHV3_9POAL)

HSP 1 Score: 70.9 bits (172), Expect = 2.450e-12
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 0
Query:   29 ATIQLAAGKPVVIFHVLHGQRSVPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLAVERKVEVGLRR-GLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQ 145
            A +QL  G+  ++F +          +PD L + L DD+    GVG+  D  +L   YG+EVARA DLR LA     +  LRR GL  L   ++G ++ K   VR+S W+  +LS+ Q
Sbjct:   57 AVLQLCVGRRCLVFQIFRADY-----VPDALFDFLADDRFYFVGVGVHDDAAKLRAQYGLEVARAKDLRGLAAYMFGKPELRRAGLHTLAWEVMGVKMHKPYHVRVSSWDARRLSQAQ 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16272.3978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.470e-6878.773'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI3.940e-2140.88Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
D7FIV2_ECTSI5.560e-2140.153'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE1.210e-1637.063'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE3.900e-1638.303'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1E5VPQ2_9POAL1.810e-1438.333'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A7S0LL15_9EUKA2.160e-1336.69Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
UPI00081150E81.200e-1236.11exonuclease 3'-5' domain-containing protein 2-like... [more]
A0A0A0L9B9_CUCSA1.570e-1233.333'-5' exonuclease domain-containing protein n=4 Ta... [more]
A0A5J9VHV3_9POAL2.450e-1236.443'-5' exonuclease domain-containing protein (Fragm... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 6..145
e-value: 1.4E-9
score: 37.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..147
e-value: 1.0E-33
score: 118.2
NoneNo IPR availablePANTHERPTHR13620:SF55coord: 5..146
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 5..146
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 6..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16272contigH-elongata_contig16272:2352..2795 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16272.3978.1mRNA_H-elongata_contig16272.3978.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16272 2352..2795 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16272.3978.1 ID=prot_H-elongata_contig16272.3978.1|Name=mRNA_H-elongata_contig16272.3978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MQAEVNGNVIGLDIEWEISSAGAPLNPPATIQLAAGKPVVIFHVLHGQRS
VPADLPDQLANLLEDDKLTKTGVGIKGDCTRLSNAYGVEVARAADLRSLA
VERKVEVGLRRGLADLCVHLLGARLPKESTVRMSRWNTVKLSKEQKA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf