prot_H-elongata_contig162274.3959.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig162274.3959.1
Unique Nameprot_H-elongata_contig162274.3959.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
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BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Match: A0A6H5KVD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVD5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.360e-19
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:   25 GVYGASVGTALLDAVGIGSDNLVPRGIAMGASAHSIGTAALMEREPE 71
            GVYGASVGTA+LDA+G+GSDNLVPRGIAMGASAHSIGTAALMEREPE
Sbjct:  428 GVYGASVGTAVLDAMGVGSDNLVPRGIAMGASAHSIGTAALMEREPE 474
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BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Match: A0A835YPB8_9STRA (LrgB-like family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.140e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:   25 GVYGASVGTALLDAVGIGSDNLVPRGIAMGASAHSIGTAALMEREPE 71
            G+YGAS G  LLD +G   D ++PRGIA GASAHSIGTAAL+E EP+
Sbjct:  439 GIYGASFGKTLLDKMGYTKDRIIPRGIATGASAHSIGTAALLEDEPD 485
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BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Match: A0A7S4D6V3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6V3_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 2.510e-8
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 0 
Query:   25 GVYGASVGTALLDAVGIGSDNLVPRGIAMGASAHSIGTAALMEREPEVTLI 75
            GVYGASVG  LL   G      + RG+AMGA+AHSIGTAALME EPE T I
Sbjct:  215 GVYGASVGKDLLAKFGAPPSAPLVRGLAMGATAHSIGTAALMEGEPEATAI 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162274.3959.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVD5_9PHAE4.360e-1993.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPB8_9STRA1.140e-1065.96LrgB-like family-domain-containing protein n=1 Tax... [more]
A0A7S4D6V3_HETAK2.510e-864.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007300CidB/LrgB familyPFAMPF04172LrgBcoord: 25..84
e-value: 4.3E-8
score: 33.0
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 91..93
NoneNo IPR availableTMHMMTMhelixcoord: 72..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162274contigH-elongata_contig162274:220..498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162274.3959.1mRNA_H-elongata_contig162274.3959.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig162274 220..498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig162274.3959.1 ID=prot_H-elongata_contig162274.3959.1|Name=mRNA_H-elongata_contig162274.3959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
ASPTAASSNLTYDLISIMAHPHEPGVYGASVGTALLDAVGIGSDNLVPRG
IAMGASAHSIGTAALMEREPEVTLILLGSLSIFLSFVILLSTI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007300CidB/LrgB