prot_H-elongata_contig162054.3947.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig162054.3947.1
Unique Name	prot_H-elongata_contig162054.3947.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	119

Homology

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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.930e-23
Identity = 60/116 (51.72%), Postives = 72/116 (62.07%), Query Frame = 0

Query:    5 QELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYDKVGLQLCGRQSVSGTDASMGDAENHSTEAFSTASPAP-VSVVTSRAKQNMILFAKAGFLTTLADDRT 119
            +ELW R +K L+SVGK G+KPSHVRSL  L+ AHTLVKVKVNIP AD ++VGL+L G+    G     GD +         ASPA  VSVVT    Q +ILFA   FL + A   T
Sbjct:   23 EELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGK---GGLALGGGDGDE--------ASPAVGVSVVTVNPNQKVILFANTEFLASQARGET 127

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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.790e-22
Identity = 57/115 (49.57%), Postives = 70/115 (60.87%), Query Frame = 0

Query:    5 QELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYDKVGLQLCGRQSVSGTDASMGDAENHSTEAFSTASPAPVSVVTSRAKQNMILFAKAGFLTTLADDRT 119
            +ELW R +K L+SVGK G+KPSHVRSL  L+ AHTLVKVKVNIP AD ++VGL+L G+    G  +  GD +  S           VSVVT    Q +ILFA   FL + A   T
Sbjct:  100 EELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGK---GGLKSGGGDGDEASRAVG-------VSVVTVNPNQKVILFANTDFLASQARGET 204

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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A835YHR7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHR7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.770e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0

Query:    5 QELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYD 53
            +ELW +P+K L+ +G+ GV  SHVRSL +LV+ HT+V+VKVN  GA Y+
Sbjct:   66 EELWRKPKKELLKIGQGGVTASHVRSLTDLVQHHTIVRVKVNTKGASYE 114

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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A7S1Y095_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y095_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.280e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0

Query:    3 GWQELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVN 46
            G ++ W   RK LMS+G  G  P+H  SL++L+EAHT +KVK+N
Sbjct:    7 GVEKAWRFLRKQLMSIGSKGAGPTHGNSLRQLLEAHTTIKVKIN 50

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BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Match: A0A7S0WR80_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR80_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 2.530e-5
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0

Query:    6 ELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGADYDKVGLQLCGRQSVSGTDASMGDA 75
            +LW+   + LM +GK G + SH+RSL ELV AHTLVKV++N            L G Q V+G  AS G+A
Sbjct:  122 QLWSACSRALMKLGKGGAQESHIRSLGELVGAHTLVKVQLN----------GDLSGLQQVAGDLASGGNA 181

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot

BLAST of mRNA_H-elongata_contig162054.3947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
D7G6K1_ECTSI	2.930e-23	51.72	CRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JP08_9PHAE	5.790e-22	49.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835YHR7_9STRA	8.770e-11	55.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S1Y095_9STRA	1.280e-5	50.00	Hypothetical protein (Fragment) n=1 Tax=Grammatoph...	[more]
A0A7S0WR80_9CHLO	2.530e-5	45.71	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 13..60 e-value: 2.6E-5 score: 24.3
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 11..60

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig162054	contig	H-elongata_contig162054:574..1198 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig162054.3947.1	mRNA_H-elongata_contig162054.3947.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig162054 574..1198 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig162054.3947.1 ID=prot_H-elongata_contig162054.3947.1|Name=mRNA_H-elongata_contig162054.3947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MCGWQELWTRPRKHLMSVGKAGVKPSHVRSLKELVEAHTLVKVKVNIPGA
DYDKVGLQLCGRQSVSGTDASMGDAENHSTEAFSTASPAPVSVVTSRAKQ
NMILFAKAGFLTTLADDRT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001890	RNA-binding_CRM
IPR035920	YhbY-like_sf