prot_H-elongata_contig16170.3936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16170.3936.1
Unique Nameprot_H-elongata_contig16170.3936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length185
Homology
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.950e-57
Identity = 98/133 (73.68%), Postives = 106/133 (79.70%), Query Frame = 0
Query:   52 ALQAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLALRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGIQR 184
            ALQAGFYIGS L VVTKTA  PDV EFVM+E EFERRA+ N+AMFRD IK RN GK +   PE+E  GPA EL+ RLRAEE  K HFTYIVL LRDQH+EWF + EKG LKRELASIYHYYLHP HCP GIQR
Sbjct:  215 ALQAGFYIGSCLTVVTKTARLPDVCEFVMNEAEFERRAETNSAMFRDKIKQRNPGKSREEGPEAERNGPAHELLGRLRAEEVGKSHFTYIVLTLRDQHMEWFTDHEKGSLKRELASIYHYYLHPGHCPGGIQR 347          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.230e-50
Identity = 88/121 (72.73%), Postives = 98/121 (80.99%), Query Frame = 0
Query:   64 RVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLALRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGIQR 184
            +VVTKTA  PDV EFVM+E EFERRA+ N+AMFRD IK RN GK +   PE+E  GPA EL+ RLRA+E  K HFTYIVL LRDQHVEWF+N +KG LKRELASIYHYYLHPEHCP GIQR
Sbjct:  177 QVVTKTARLPDVCEFVMNEAEFERRAETNSAMFRDKIKQRNPGKSRAEGPEAERNGPAHELLGRLRAQEVGKSHFTYIVLTLRDQHVEWFSNHDKGSLKRELASIYHYYLHPEHCPGGIQR 297          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: D7FYN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN6_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.100e-25
Identity = 61/131 (46.56%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   52 ALQAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLALRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGI 182
            AL+AGFYIGS ++VVTK    PDV+ FV+DE   ++R + +  ++  ++ LR  G       E +     K+L+ RLR  E    HFTYIVL+LR++HV+ +  +E   L  ELASIYHYYLHPE CP GI
Sbjct:  219 ALEAGFYIGSRIQVVTKAQGNPDVHVFVLDEDLLKQRQENDEPVYTGDVFLRPPG-----GIEEQGSSALKKLLTRLREREPEMDHFTYIVLSLREEHVDSYRQRETP-LHLELASIYHYYLHPEDCPPGI 343          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: UPI001176547D (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI001176547D)

HSP 1 Score: 85.1 bits (209), Expect = 7.150e-16
Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLH 174
            QA F+IG+S+R++T+ A  PDV+E V+ E EF+RR      +F   IK R  G+    D         +  ++ L AEE  K  FT +V+  LRD+H+    N E G L RELA IYHYY+H
Sbjct:  228 QAIFFIGNSVRMITRPADSPDVHELVLSEEEFKRREANKEEIFSGFIKNRRPGESSQHD---------ERFLQNLIAEERGKESFTAVVITGLRDEHIAVMKN-EFGALTRELAHIYHYYIH 339          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A6P8GK83_CLUHA (structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1 n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8GK83_CLUHA)

HSP 1 Score: 80.5 bits (197), Expect = 2.860e-14
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGIQ 183
            QA FYIG S R++TK A+ PDV+EFVM + +FER+ K    ++   I+ R  G       E E+Y      ++ L AEE  K  FT +V+  ++  H+ +   Q+     RELA IYHYY+H  H  D  Q
Sbjct:  244 QAVFYIGESARIITKPASSPDVHEFVMSKEDFERKEKNKEDIYCGVIRNRKPGDHAHIVAEEELY------LQALIAEEEGKESFTAVVITGIQSDHITYL-KQQFHLWTRELAHIYHYYVHGIHGNDVRQ 367          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1JIK2_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=7 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1JIK2_CYPCA)

HSP 1 Score: 79.7 bits (195), Expect = 5.280e-14
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 180
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  230 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGNC----SHVTASEEQFLRSIMMEEREKESFTAVIITGVQQEHVTYL-KQNLNLWTRELAHTYHYYIHGVHGND 350          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: UPI001C09A402 (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C09A402)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-13
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPDGIQ 183
            QA FYIG S R++TK A  PDV+EFVM + +FER+ K    ++   I  RN   G C    + +    +  ++ L AEE  K  FT +V+  ++ +H+ +   Q      RELA IYHYY+H  H  D  Q
Sbjct:  246 QAVFYIGQSARIITKPAASPDVHEFVMSKEDFERKEKNKEDIYCGVI--RNRKPGDC----AHIVVEEELFLQALIAEEEGKESFTAVVITGIQSEHITYL-KQHFDLWTRELAHIYHYYVHGIHGNDMRQ 369          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1HNJ5_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HNJ5_CYPCA)

HSP 1 Score: 78.2 bits (191), Expect = 1.740e-13
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 180
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  152 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGDC----SHVTASEEQFLRSIVMEEREKESFTAVIITGVQQEHVTYL-KQNFNLWTRELAHTYHYYIHGVHGND 272          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1DJU9_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DJU9_CYPCA)

HSP 1 Score: 78.2 bits (191), Expect = 1.750e-13
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 180
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  230 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGDC----SHVTASEEQFLRSIVMEEREKESFTAVIITGVQQEHVTYL-KQNFNLWTRELAHTYHYYIHGVHGND 350          
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Match: A0A8C1DI90_CYPCA (Structural maintenance of chromosomes flexible hinge domain containing 1 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DI90_CYPCA)

HSP 1 Score: 78.2 bits (191), Expect = 1.770e-13
Identity = 48/128 (37.50%), Postives = 70/128 (54.69%), Query Frame = 0
Query:   54 QAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNIKLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLA-LRDQHVEWFANQEKGCLKRELASIYHYYLHPEHCPD 180
            QA FYIG S+R+++K A  PDV+EFVM + +FER+ K   A++   I  RN   G C    S V    ++ +  +  EE  K  FT +++  ++ +HV +   Q      RELA  YHYY+H  H  D
Sbjct:  225 QAVFYIGQSVRMISKPAGSPDVHEFVMSKEDFERKEKNKEAIYTGFI--RNRKPGDC----SHVTASEEQFLRSIVMEEREKESFTAVIITGVQQEHVTYL-KQNFNLWTRELAHTYHYYIHGVHGND 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16170.3936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFL9_ECTSI2.950e-5773.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR4_9PHAE3.230e-5072.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYN6_ECTSI1.100e-2546.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001176547D7.150e-1641.80structural maintenance of chromosomes flexible hin... [more]
A0A6P8GK83_CLUHA2.860e-1438.93structural maintenance of chromosomes flexible hin... [more]
A0A8C1JIK2_CYPCA5.280e-1437.50Structural maintenance of chromosomes flexible hin... [more]
UPI001C09A4021.330e-1338.17structural maintenance of chromosomes flexible hin... [more]
A0A8C1HNJ5_CYPCA1.740e-1337.50Structural maintenance of chromosomes flexible hin... [more]
A0A8C1DJU9_CYPCA1.750e-1337.50Structural maintenance of chromosomes flexible hin... [more]
A0A8C1DI90_CYPCA1.770e-1337.50Structural maintenance of chromosomes flexible hin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038892Structural maintenance of chromosomes flexible hinge domain-containing protein 1PANTHERPTHR22640UNCHARACTERIZEDcoord: 54..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16170contigH-elongata_contig16170:5018..7087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16170.3936.1mRNA_H-elongata_contig16170.3936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16170 2921..7087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16170.3936.1 ID=prot_H-elongata_contig16170.3936.1|Name=mRNA_H-elongata_contig16170.3936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MAAMGGQVGAPVPTERGKIRQPPRVGPQAMASESGDRARFAPVLFPSLEW
AALQAGFYIGSSLRVVTKTATQPDVYEFVMDEVEFERRAKANAAMFRDNI
KLRNAGKGKCRDPESEVYGPAKELMERLRAEESSKCHFTYIVLALRDQHV
EWFANQEKGCLKRELASIYHYYLHPEHCPDGIQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038892SMCHD1