prot_H-elongata_contig161449.3925.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig161449.3925.1
Unique Nameprot_H-elongata_contig161449.3925.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
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BLAST of mRNA_H-elongata_contig161449.3925.1 vs. uniprot
Match: D7FS47_ECTSI (Major facilitator superfamily sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS47_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.460e-14
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 0 
Query:    5 TPSECKTA---RLYPSLAMFSSFLLLGVFMSALGPSVPSLSRDVSVRTELFGAVFSLRGMGYLLGSWSTSL 72
            T ++C T    RL PSLA+F SF LLGVF+S LGP++  LS D+ V     GA  +LRG+GYLLGSW +S+
Sbjct:    3 TSAKCATTNGTRLLPSLALFGSFFLLGVFISCLGPAIAPLSHDLGVADVSLGAGVALRGLGYLLGSWLSSV 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161449.3925.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS47_ECTSI7.460e-1453.52Major facilitator superfamily sugar transporter n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..68
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..73
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 50..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161449contigH-elongata_contig161449:651..872 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161449.3925.1mRNA_H-elongata_contig161449.3925.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig161449 651..872 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig161449.3925.1 ID=prot_H-elongata_contig161449.3925.1|Name=mRNA_H-elongata_contig161449.3925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MLRPTPSECKTARLYPSLAMFSSFLLLGVFMSALGPSVPSLSRDVSVRTE
LFGAVFSLRGMGYLLGSWSTSLT*
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