prot_H-elongata_contig161222.3913.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig161222.3913.1
Unique Name	prot_H-elongata_contig161222.3913.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	108

Homology

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.390e-24
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:   47 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 151

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.530e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  126 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPA 230

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.900e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  190 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 294

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.940e-22
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD +AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  538 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPA 642

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.960e-22
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD +AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  494 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPA 598

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.010e-22
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 0

Query:    6 GFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  844 GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 944

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.730e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct:  903 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1007

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.730e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct: 1012 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1116

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.760e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct: 1282 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1386

[Close]

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.770e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0

Query:    2 LEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAVRSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVTKTSTIPS 107
            L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA G   D E+ + SL   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+
Sbjct: 1302 LVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVA-GSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPA 1406

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot

BLAST of mRNA_H-elongata_contig161222.3913.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JRS6_9PHAE	5.390e-24	49.06	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JVD4_9PHAE	1.530e-22	49.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KTL3_9PHAE	1.900e-22	49.06	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K164_9PHAE	1.940e-22	49.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQN6_9PHAE	1.960e-22	49.06	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JRE9_9PHAE	2.010e-22	50.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KSG8_9PHAE	2.730e-22	49.06	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JQW4_9PHAE	2.730e-22	49.06	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JZQ8_9PHAE	2.760e-22	49.06	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	2.770e-22	49.06	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..104 e-value: 8.7E-14 score: 51.7
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..38
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 39..108
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig161222	contig	H-elongata_contig161222:139..462 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig161222.3913.1	mRNA_H-elongata_contig161222.3913.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig161222 139..462 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig161222.3913.1 ID=prot_H-elongata_contig161222.3913.1|Name=mRNA_H-elongata_contig161222.3913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
ELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASGMKRDEEQAV
RSLCSCFPIKDLGEASYYLGCHITRDRNAGTLKFDQDQYIQTVAERFGVT
KTSTIPSA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2