prot_H-elongata_contig16093.3900.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16093.3900.1
Unique Nameprot_H-elongata_contig16093.3900.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length129
Homology
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.120e-20
Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = 0
Query:   13 LAQHAGEDTTFFRKSTCGSSCHGIEKCSARLDSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLREEFSAVGATTTGSTEG 117
            L +  GED    + S    +    +   A+ DS EW T  ACIVC G+Y  GD L  +PC H YHA CIDEWLD A+ P CPLCK DLR        + + ST G
Sbjct:  311 LPRATGEDAAEEQASAAAKAAAEDDPTRAQSDSGEWSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDLRHATPPDDRSRSISTAG 415          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.960e-19
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 0
Query:   44 DSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLR 101
            DS EW T  ACIVC G+Y  GD L R+PC H YHA CIDEWLD A+ P CPLCK DLR
Sbjct:  249 DSGEWSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLR 306          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.870e-19
Identity = 43/90 (47.78%), Postives = 48/90 (53.33%), Query Frame = 0
Query:   44 DSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLRE---------EFSAVGATTTGSTEGPTMGNAG 124
            D+ EW T  ACIVC  +Y  GD L R+PC H YHA CIDEWLD A+ P CPLCK DLR            S VG   T        G +G
Sbjct:  149 DTGEWSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGTSVNAARVGGGSG 238          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.200e-16
Identity = 37/84 (44.05%), Postives = 44/84 (52.38%), Query Frame = 0
Query:   45 SREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLREEFSAVGATTTGSTEGPTMGNAGIESV 128
            S  W  + +CI+C GEY+ GD LCR+PC HTYHA CID WLD      CPLCK  L        ++  G T      NA   S 
Sbjct:   69 SELWSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETADGGGTNASTTSA 152          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.140e-15
Identity = 43/110 (39.09%), Postives = 54/110 (49.09%), Query Frame = 0
Query:    2 PLSGVLQTTRALAQHAGEDTTFFRKSTCGSSCHGIEKCSA-RLDSR----------EWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL 100
            P  G ++   A    AG +T             G E  S  R D++          E  T G+CIVC G+Y+ G+ LCR+ CGH YHA CIDEWLD      CPLCK D+
Sbjct:  189 PAGGEIRDAAAAGPAAGSETDVVVAEASAGEKAGDEGPSCPRTDAKGGVQGEEAKGEGSTGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 8.910e-15
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   47 EWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL 100
            E  T G+CIVC G+Y+ G+ LCR+ CGH YHA CIDEWLD      CPLCK D+
Sbjct:  252 EGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.970e-14
Identity = 36/82 (43.90%), Postives = 43/82 (52.44%), Query Frame = 0
Query:   45 SREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL-----------REEFSAVGATTTGST 115
            S  W +  +CI+C GEY+ GD LCR+PC HTYHA CID WLD      CPLCK  L            +E    G T   +T
Sbjct:  449 SELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIGGAGGTNATTT 530          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: C1E4K7_MICCC (RING-type domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E4K7_MICCC)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-10
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0
Query:   54 CIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLREEFSAVGATTTGSTEGP 118
            C VCLGEY RG+ L  +PCGH +HA C+D WL +  +  CP C+  + +  S   A+ TG+   P
Sbjct:  235 CYVCLGEYERGETLRTLPCGHAFHAECVDRWL-LEMRGACPTCRAPIGDRLSKGAASGTGAAAPP 298          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: A0A485KSF0_9STRA (Aste57867_11189 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSF0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.710e-10
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 0
Query:   42 RLDSREWYTTGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL 100
            + D     ++  C +CL ++S  + L ++PCGHTYH ACIDEWL   + P CPLCK+D+
Sbjct:  467 KADKTNTGSSDGCSICLVDFSENEVLRQLPCGHTYHPACIDEWL--VKSPACPLCKRDV 523          
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Match: V4MRY3_EUTSA (RING-type domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MRY3_EUTSA)

HSP 1 Score: 65.1 bits (157), Expect = 9.520e-10
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0
Query:   50 TTG-ACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDLR 101
            TTG +C +CL +YS GD L  +PCGH YHAAC+D WL  + +  CP+CK+D R
Sbjct:  226 TTGFSCAICLEDYSVGDKLRVLPCGHKYHAACVDSWLT-SWRTFCPVCKRDAR 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16093.3900.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ1_ECTSI4.120e-2044.76RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI1.960e-1967.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE6.870e-1947.78RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUH7_9PHAE3.200e-1644.05RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI6.140e-1539.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE8.910e-1559.26RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LQW5_ECTSI1.970e-1443.90RING-type domain-containing protein n=1 Tax=Ectoca... [more]
C1E4K7_MICCC1.650e-1043.08RING-type domain-containing protein n=1 Tax=Microm... [more]
A0A485KSF0_9STRA1.710e-1045.76Aste57867_11189 protein n=1 Tax=Aphanomyces stella... [more]
V4MRY3_EUTSA9.520e-1054.72RING-type domain-containing protein n=2 Tax=Eutrem... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 54..96
e-value: 6.9E-5
score: 32.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 53..97
e-value: 1.7E-11
score: 44.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 54..97
score: 12.165
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 38..113
e-value: 2.2E-15
score: 57.6
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 37..119
NoneNo IPR availablePANTHERPTHR22763:SF162coord: 37..119
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 49..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16093contigH-elongata_contig16093:1089..1851 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16093.3900.1mRNA_H-elongata_contig16093.3900.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16093 2..2127 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16093.3900.1 ID=prot_H-elongata_contig16093.3900.1|Name=mRNA_H-elongata_contig16093.3900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MPLSGVLQTTRALAQHAGEDTTFFRKSTCGSSCHGIEKCSARLDSREWYT
TGACIVCLGEYSRGDHLCRMPCGHTYHAACIDEWLDIAEQPCCPLCKKDL
REEFSAVGATTTGSTEGPTMGNAGIESV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD