prot_H-elongata_contig160686.3887.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig160686.3887.1
Unique Name	prot_H-elongata_contig160686.3887.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	100

Homology

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A6H5JW39_9PHAE (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW39_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.190e-33
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0

Query:   17 IPLYHYDTAGKKVPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHC 93
            +PL   D   +KVPAY+PDP ELATLIYTSGTTG+PKGVMLSH NIISNIVG+R +LP DLVSCHDRSLSFLPWAHC
Sbjct:  279 VPLALRDLEEEKVPAYIPDPSELATLIYTSGTTGKPKGVMLSHGNIISNIVGIRAILPEDLVSCHDRSLSFLPWAHC 355

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A835ZGH2_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.940e-25
Identity = 47/64 (73.44%), Postives = 58/64 (90.62%), Query Frame = 0

Query:   29 VPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 92
            VPA +P+PR+LATLIYTSGTTG PKGV L+H N++SN++GLRTVLP  +++CHDRSLSFLPWAH
Sbjct:  160 VPAIIPNPRDLATLIYTSGTTGTPKGVRLTHANLMSNVLGLRTVLPEGVLTCHDRSLSFLPWAH 223

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A850BBL5_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BBL5_9DELT)

HSP 1 Score: 84.0 bits (206), Expect = 9.030e-17
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0

Query:   25 AGKK--VPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 92
            AG+K   PA  P+P++ ATLIYTSGTTG PKGV+LSH NI SNI  +  +LP +     DRSLSFLPWAH
Sbjct:  155 AGEKNPTPAIKPEPKDTATLIYTSGTTGNPKGVILSHGNIASNISAVHEILPLE---GEDRSLSFLPWAH 221

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7S2PRW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PRW1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.430e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0

Query:   33 LPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVL--PTDLVSCHDRSLSFLPWAH 92
            +P   +LA L+YTSGTTG PKGV L+HDN +SN++G+RT++  PTD +   DRSL+FLPWAH
Sbjct:  227 MPTADDLANLVYTSGTTGVPKGVELTHDNSVSNVMGVRTMVTNPTDFIRQSDRSLAFLPWAH 288

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A849Z1T6_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849Z1T6_9DELT)

HSP 1 Score: 81.6 bits (200), Expect = 5.840e-16
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 0

Query:   26 GKKVPAYL--PDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 92
            GKK PA    P+P++ A LIYTSGTTG PKGV+LSH NI+SN+  ++ +LP   +   DRSLSFLPWAH
Sbjct:  155 GKKEPAEALDPEPKDTACLIYTSGTTGDPKGVILSHGNIVSNVNAVQHMLP---IGADDRSLSFLPWAH 220

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7Y5DXK5_9DELT (Long-chain fatty acid--CoA ligase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5DXK5_9DELT)

HSP 1 Score: 81.3 bits (199), Expect = 7.970e-16
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0

Query:   26 GKKVPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 92
            GKK     PD  +LA +IYTSGTTG PKGVMLSH NI SN+  +  V P   +S  DRSLSFLPWAH
Sbjct:  157 GKKAATIRPDRDDLACIIYTSGTTGNPKGVMLSHYNIASNVSAVHDVFP---MSSEDRSLSFLPWAH 220

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A4U1HS98_9DELT (Long-chain fatty acid--CoA ligase n=2 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1HS98_9DELT)

HSP 1 Score: 81.3 bits (199), Expect = 7.980e-16
Identity = 47/82 (57.32%), Postives = 52/82 (63.41%), Query Frame = 0

Query:   25 AGKK--VPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH-----CERAAKL 99
            AG K  VPA  P P + A LIYTSGTTG PKGV+LSH NI SNI  +  +LP   +   DRSLSFLPWAH     CE  A L
Sbjct:  155 AGAKSPVPAIKPTPADTACLIYTSGTTGNPKGVILSHGNIASNISAVHEILP---IEGEDRSLSFLPWAHSFGHTCELHALL 233

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7S2PSF4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PSF4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.070e-16
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0

Query:   33 LPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVL--PTDLVSCHDRSLSFLPWAH 92
            +P   +LA L+YTSGTTG PKGV L+HDN +SN++G+RT++  PTD +   DRSL+FLPWAH
Sbjct:  227 MPTADDLANLVYTSGTTGVPKGVELTHDNSVSNVMGVRTMVTNPTDFIRQSDRSLAFLPWAH 288

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BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A7S2XXE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXE0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-15
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 0

Query:   30 PAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHC 93
            P++  +  ++ATLIYTSGTTG PKGV+L+H N+I NI  L   LP + ++ + RSLSFLPWAHC
Sbjct:  173 PSHSAEESDVATLIYTSGTTGNPKGVVLTHSNLIHNIWALENTLPKNTLNKNHRSLSFLPWAHC 236

[Close]

BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Match: A0A2E5M427_9GAMM (Long-chain fatty acid--CoA ligase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M427_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 1.490e-15
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 0

Query:   23 DTAGKKVPAYLPDPRELATLIYTSGTTGRPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAH 92
             +AG  V    P P ELA  IYTSGTTG PKGV LSH NI+SNI  ++ +LP   +S  DRSLSFLPWAH
Sbjct:  161 SSAGTPVAPEFPAPEELAGFIYTSGTTGDPKGVKLSHGNIVSNINAVQPLLP---LSGDDRSLSFLPWAH 227

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot

BLAST of mRNA_H-elongata_contig160686.3887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JW39_9PHAE	1.190e-33	79.22	AMP-binding domain-containing protein n=2 Tax=Ecto...	[more]
A0A835ZGH2_9STRA	4.940e-25	73.44	Long chain acyl-CoA synthetase n=1 Tax=Tribonema m...	[more]
A0A850BBL5_9DELT	9.030e-17	61.43	Long-chain fatty acid--CoA ligase n=1 Tax=Polyangi...	[more]
A0A7S2PRW1_9STRA	4.430e-16	59.68	Hypothetical protein (Fragment) n=1 Tax=Leptocylin...	[more]
A0A849Z1T6_9DELT	5.840e-16	59.42	Long-chain fatty acid--CoA ligase n=1 Tax=Polyangi...	[more]
A0A7Y5DXK5_9DELT	7.970e-16	61.19	Long-chain fatty acid--CoA ligase n=1 Tax=Polyangi...	[more]
A0A4U1HS98_9DELT	7.980e-16	57.32	Long-chain fatty acid--CoA ligase n=2 Tax=Polyangi...	[more]
A0A7S2PSF4_9STRA	8.070e-16	59.68	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S2XXE0_9STRA	1.100e-15	56.25	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A2E5M427_9GAMM	1.490e-15	60.00	Long-chain fatty acid--CoA ligase n=1 Tax=Gammapro...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020459	AMP-binding	PRINTS	PR00154	AMPBINDING	coord: 49..57 score: 74.24 coord: 37..48 score: 52.18
IPR042099	AMP-dependent synthetase-like superfamily	GENE3D	3.40.50.12780		coord: 8..94 e-value: 1.1E-20 score: 75.9
IPR000873	AMP-dependent synthetase/ligase	PFAM	PF00501	AMP-binding	coord: 31..93 e-value: 5.1E-19 score: 68.2
None	No IPR available	PANTHER	PTHR43272:SF3	LONG CHAIN ACYL-COA SYNTHETASE 4	coord: 28..93
None	No IPR available	PANTHER	PTHR43272	FAMILY NOT NAMED	coord: 28..93
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..99
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..18
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.755
None	No IPR available	SUPERFAMILY	56801	Acetyl-CoA synthetase-like	coord: 21..93
None	No IPR available	TMHMM	TMhelix		coord: 4..22
IPR020845	AMP-binding, conserved site	PROSITE	PS00455	AMP_BINDING	coord: 42..53

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig160686	contig	H-elongata_contig160686:198..497 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig160686.3887.1	mRNA_H-elongata_contig160686.3887.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig160686 2..1027 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig160686.3887.1 ID=prot_H-elongata_contig160686.3887.1|Name=mRNA_H-elongata_contig160686.3887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MHVLILMLLIVCTVTVIPLYHYDTAGKKVPAYLPDPRELATLIYTSGTTG
RPKGVMLSHDNIISNIVGLRTVLPTDLVSCHDRSLSFLPWAHCERAAKL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR020459	AMP-binding
IPR042099	AMP-dep_Synthh-like_sf
IPR000873	AMP-dep_Synth/Lig
IPR020845	AMP-binding_CS