prot_H-elongata_contig16053.3880.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16053.3880.1
Unique Nameprot_H-elongata_contig16053.3880.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length379
Homology
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BLAST of mRNA_H-elongata_contig16053.3880.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 3.990e-68
Identity = 201/338 (59.47%), Postives = 236/338 (69.82%), Query Frame = 0 
Query:   55 MMEALKRSTDVDTLSFHNAGLSDATVDSLVEGLPHTTVRCLCLDYNQ-PLTLPFS---TQHASNGSEGGSLDEEDGNNPSASTLSS--RNLPGLVCEASKLRQLQLRGNGIDDAEAVALAEAIEGNDVLCSLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAELEKRAEVEAIITAQNKAAAQEKKKKKPLINAETRLPLSIVTW----DSDKRAIAGGSKSLAALNLSENPELGAGGALVKLLEKIAEARNSDEEEGKSGQD---GTPGEAVALQELHVARCRVFAEDDEGQT-ASVAAAADALKPTVVTL 378
            MMEALKRS+DVDT+ FHNAGL+ A++D LVEGLPHTTVRC  LDYN  P+ L  S   T+   +G    +L+E     P+    SS  RN  GLV E SKL+ L LRGN + DAEA+ALAEAIE         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAE EKRA  +  I AQNK AA   KKKK     ETRLPLS VT     D   RA+AGGS+SLAALNL++N +LG GGAL  LL +I  AR   EE G++G+    G  G +V LQELH+ RC+ +AE+  G+   ++AA + AL+PT V +
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNTLPVVLSSSSPPTRPPPSGPTEPALEEA----PATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDA-KVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARK--EEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAEEAGGEDDTAIAAMSFALRPTKVVV 331
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BLAST of mRNA_H-elongata_contig16053.3880.1 vs. uniprot
Match: A0A7S1XLH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLH0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-11
Identity = 57/181 (31.49%), Postives = 83/181 (45.86%), Query Frame = 0 
Query:    1 DSPSSCSIFQVPEHPCLVSRRLTKGSNEATIPKASSEQHIRFQNFIVDLTTLRIMMEALKRSTDVDTLSFHNAGLSDATVDSLVEGLPHTTVRCLCLDYNQPLTLPFSTQHASNGSEGGSLDEEDGNNPSASTLSSRNLPGLVCEASKLRQLQLRGNGIDDAEAVALAEAIEGNDVLCSLN 181
            D  ++C+   V  HP +++  LT           ++E H+R  N   D  +L  ++E LK    V  L FHNA LS A+V+ L   LP TTV  L +D+N    +P  + +A+                            L  +ASKLR L LRG G+D+   +ALA  +E N  L +LN
Sbjct:  143 DLKAACAAAGVEPHPHMLAHPLTGAP-------VTAEVHVR--NMQCDRNSLACLLEVLKAHPAVAALRFHNAALSQASVELLAARLPETTVGTLAVDFNDAAAVPDKSAYAA----------------------------LAGKASKLRVLSLRGCGLDEGAGLALAANLEVNVGLRALN 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16053.3880.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT35_ECTSI3.990e-6859.47Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A7S1XLH0_9STRA2.360e-1131.49Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 202..229
e-value: 1.8
score: 15.3
coord: 62..89
e-value: 140.0
score: 1.9
coord: 146..173
e-value: 0.57
score: 18.9
coord: 174..201
e-value: 4.6
score: 12.4
coord: 290..316
e-value: 76.0
score: 3.9
NoneNo IPR availablePANTHERPTHR46984FAMILY NOT NAMEDcoord: 140..241
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 50..307
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 25..260
e-value: 1.8E-23
score: 84.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 179..196
e-value: 0.02
score: 14.9
coord: 202..223
e-value: 1.3
score: 9.3
coord: 147..168
e-value: 0.45
score: 10.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16053contigH-elongata_contig16053:716..3722 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16053.3880.1mRNA_H-elongata_contig16053.3880.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16053 716..3722 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16053.3880.1 ID=prot_H-elongata_contig16053.3880.1|Name=mRNA_H-elongata_contig16053.3880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=379bp
DSPSSCSIFQVPEHPCLVSRRLTKGSNEATIPKASSEQHIRFQNFIVDLT
TLRIMMEALKRSTDVDTLSFHNAGLSDATVDSLVEGLPHTTVRCLCLDYN
QPLTLPFSTQHASNGSEGGSLDEEDGNNPSASTLSSRNLPGLVCEASKLR
QLQLRGNGIDDAEAVALAEAIEGNDVLCSLNLFGNKISDVGAAAFAKSLR
LNSVLRALSLANNRLTSASAEAFGLLLAGGYEVLPAELEKRAEVEAIITA
QNKAAAQEKKKKKPLINAETRLPLSIVTWDSDKRAIAGGSKSLAALNLSE
NPELGAGGALVKLLEKIAEARNSDEEEGKSGQDGTPGEAVALQELHVARC
RVFAEDDEGQTASVAAAADALKPTVVTL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt