prot_H-elongata_contig160478.3876.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig160478.3876.1
Unique Nameprot_H-elongata_contig160478.3876.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
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BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Match: D8LMP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMP3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.900e-23
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0 
Query:    1 RGDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 48
            RGDLESVQKYI+TGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA
Sbjct:   86 RGDLESVQKYIATGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 133
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BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Match: A0A103Y1S0_CYNCS (Ankyrin repeat-containing protein n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y1S0_CYNCS)

HSP 1 Score: 50.8 bits (120), Expect = 4.040e-5
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 0 
Query:    2 GDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 48
            GDLE +++ +++G D+   D DN TALH+A    FS VA+LL+ +GA
Sbjct:   53 GDLEGIKELLTSGTDVNFKDIDNRTALHVAACQGFSNVAELLLERGA 99
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BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Match: M1VJX3_CYAM1 (Similar to Raf/ATN-like protein kinase, with ankyrin repeats n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VJX3_CYAM1)

HSP 1 Score: 50.4 bits (119), Expect = 5.950e-5
Identity = 21/48 (43.75%), Postives = 34/48 (70.83%), Query Frame = 0 
Query:    1 RGDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGA 48
            RGD+ +V+ +I  G D+ + D+D  TALH+A A  +++VA+LL+  GA
Sbjct: 1201 RGDIAAVRSFIGEGVDVRQADYDRRTALHLAAAEGYTEVAKLLVEAGA 1248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160478.3876.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMP3_ECTSI1.900e-2397.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A103Y1S0_CYNCS4.040e-546.81Ankyrin repeat-containing protein n=2 Tax=Cynara c... [more]
M1VJX3_CYAM15.950e-543.75Similar to Raf/ATN-like protein kinase, with ankyr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 23..52
e-value: 0.0015
score: 27.8
coord: 56..85
e-value: 0.0013
score: 27.9
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 23..55
score: 11.087
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 56..88
score: 12.556
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..102
e-value: 2.0E-29
score: 104.8
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 2..102
IPR020683Ankyrin repeat-containing domainPFAMPF12796Ank_2coord: 2..87
e-value: 2.1E-13
score: 50.6
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 1..102
score: 31.537
NoneNo IPR availablePANTHERPTHR24134FAMILY NOT NAMEDcoord: 2..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160478contigH-elongata_contig160478:275..1087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160478.3876.1mRNA_H-elongata_contig160478.3876.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig160478 275..1087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig160478.3876.1 ID=prot_H-elongata_contig160478.3876.1|Name=mRNA_H-elongata_contig160478.3876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RGDLESVQKYISTGGDLERMDWDNCTALHIACAGAFSQVAQLLINKGANL
DAKTRIEHTPLHLACRYGHYNIALALLVKGAEVDSRDNERNTPLHKAARY
KH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom