prot_H-elongata_contig16036.3874.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16036.3874.1
Unique Nameprot_H-elongata_contig16036.3874.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length338
Homology
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: D8LK15_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK15_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 3.250e-76
Identity = 154/308 (50.00%), Postives = 188/308 (61.04%), Query Frame = 0
Query:   29 SVEEIVLKEAEALRAGRDKSQRFMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQPVVISALPPVAESISPLTSNVAAEAHDSSQKTRNSAGGKEGYGAVLLTEESETPKESSSSGICEKMLQTTTGAASKGSERGAGSGEKGVSVSLGESPDRGAPRSGVLCKQQVVATGERERAERGSAADGGASTKTSDKRWKFRVDVRKRNSGLKRMDLINAVATSVGEGHSVSMASPDVTIVVEAIKSVVGASVLFNYVLNHEYSMSRLQDAVCGNIIE 336
            SVEE+V +EA+ALR+G DK  RF SVNTSVKGV+MVCV+DP +D+L LVD ++ EIRT+  RRSRFLERVTP+QVT++SE++  K A  P+V  ALPPVAE + PL + V A              G +  G   +  E  TP    SSG   K  +T      K  E  A S   G                    +  VV+ G  +              KT DKRWKFR D+R+RNSGLKR+DLINA   SVG GHSV+M SP+VTIVVEA+KSVVG SVLFNY  NHEYS+SRLQDAVCG I++
Sbjct:  135 SVEEMVKQEADALRSGSDKVHRFKSVNTSVKGVVMVCVVDPKVDILRLVDTLYDEIRTTKMRRSRFLERVTPLQVTAYSELDAIKEAVGPIVSKALPPVAEEVPPLPTAVRAS-------------GAKATGPAAVKTEKGTPAPKDSSGDKVKAAETEE----KEGEGAAASAPNGTGDXXXXXXXXXXXXXXXXXEGDVVSDGNEK--------------KTCDKRWKFRADIRRRNSGLKRLDLINAAVGSVGVGHSVNMTSPEVTIVVEAVKSVVGVSVLFNYARNHEYSISRLQDAVCGAILD 411          
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: A0A835Z5R2_9STRA (THUMP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.540e-6
Identity = 25/74 (33.78%), Postives = 46/74 (62.16%), Query Frame = 0
Query:   58 VKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQPVVISALPPVAESI 131
            ++GV++VCV+D T+D++ +   +F+++R +  RRSRFL R  P+  T + + E     A+P+V  A   + E +
Sbjct:    1 LRGVVVVCVLDKTLDIVSITAELFSDVRKTKVRRSRFLIRAVPLATTCYGDAESLVGIAKPLVDEAFETLREPV 74          
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: A0A1V9Z6J2_9STRA (THUMP domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6J2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.040e-5
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 0
Query:   38 AEALRAGRDKSQRFMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQP 118
            AE ++  +    RF++++T VKG+IM+ ++D  + V+ LVD IF E+  + +  SRF++R+ P++   F  +E    A  P
Sbjct:   86 AEEIKGLKKDKGRFVALDTGVKGIIMIQIVDRKIPVIALVDRIFEEVVDTKQFSSRFIQRLIPLENLCFPSVEDITTAVTP 166          
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: UPI0020086BFC (uncharacterized protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020086BFC)

HSP 1 Score: 55.5 bits (132), Expect = 4.570e-5
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  249 STKTSDKRWKFRVDVRKRNSG-LKRMDLINAVATSVGEGHSVSMASPDVTIVVEAIKSVVGASVLFNYVLNHEYSMSRLQDA 329
            S + SDK++ +++++R RN   LKR  LI  +A  V EGH+VS+ SP++ I+VE  KSV G SV+ +Y    ++++  + +A
Sbjct:  182 SPEPSDKKFTYKIELRIRNHNTLKRDTLIPEIAKCVPEGHTVSLGSPELFILVEIFKSVCGVSVVKDYYKLQKFNIMEIANA 263          
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Match: A0A5D6XRX3_9STRA (THUMP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRX3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.150e-5
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 0
Query:   37 EAEALRAG--RDKSQRFMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTPIQVTSFSEIELFKAAAQPVVISAL 124
            E  ALRA   + K+ RF +++T VKGVI++ ++DP +    LV  IFAE+  S +  SRF+ R+ P++    +  +  +  A+P++ + L
Sbjct:  102 EINALRADAKKRKTGRFTALDTGVKGVILIQILDPEISARALVLRIFAEVEASKEFASRFISRLIPLEKIGHAARDDIRELARPMIAAQL 191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16036.3874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LK15_ECTSI3.250e-7650.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5R2_9STRA8.540e-633.78THUMP domain-containing protein n=1 Tax=Tribonema ... [more]
A0A1V9Z6J2_9STRA3.040e-533.33THUMP domain-containing protein n=1 Tax=Thraustoth... [more]
UPI0020086BFC4.570e-539.02uncharacterized protein n=1 Tax=Epithele typhae Ta... [more]
A0A5D6XRX3_9STRA9.150e-534.44THUMP domain-containing protein n=1 Tax=Pythium br... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2300.10coord: 247..313
e-value: 2.8E-10
score: 42.5
NoneNo IPR availablePANTHERPTHR13452:SF10THUMP DOMAIN-CONTAINING PROTEIN 1coord: 29..327
NoneNo IPR availableSUPERFAMILY143437THUMP domain-likecoord: 254..311
IPR004114THUMP domainPFAMPF02926THUMPcoord: 255..307
e-value: 3.3E-4
score: 20.8
IPR040183THUMP domain-containing protein 1-likePANTHERPTHR13452THUMP DOMAIN CONTAINING PROTEIN 1-RELATEDcoord: 29..327

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16036contigH-elongata_contig16036:247..1496 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16036.3874.1mRNA_H-elongata_contig16036.3874.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16036 139..1774 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16036.3874.1 ID=prot_H-elongata_contig16036.3874.1|Name=mRNA_H-elongata_contig16036.3874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=338bp
MINSGSVVAAEKLISVTQPSEEAKPPLPSVEEIVLKEAEALRAGRDKSQR
FMSVNTSVKGVIMVCVMDPTMDVLGLVDAIFAEIRTSGKRRSRFLERVTP
IQVTSFSEIELFKAAAQPVVISALPPVAESISPLTSNVAAEAHDSSQKTR
NSAGGKEGYGAVLLTEESETPKESSSSGICEKMLQTTTGAASKGSERGAG
SGEKGVSVSLGESPDRGAPRSGVLCKQQVVATGERERAERGSAADGGAST
KTSDKRWKFRVDVRKRNSGLKRMDLINAVATSVGEGHSVSMASPDVTIVV
EAIKSVVGASVLFNYVLNHEYSMSRLQDAVCGNIIED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004114THUMP_dom
IPR040183THUMPD1-like