prot_H-elongata_contig160176.3866.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig160176.3866.1
Unique Nameprot_H-elongata_contig160176.3866.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length148
Homology
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BLAST of mRNA_H-elongata_contig160176.3866.1 vs. uniprot
Match: D7FV22_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV22_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.810e-16
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 0 
Query:   36 TKSGSFMRGIAAEARAWSARALAVGG---------TRED-IDPVSMLLPEAATGQRVGGPAGRGPLLRRLQTAVDG 101
            +K+G +MRG+AAEARAWSARAL+            TR D +DPV+MLLP++A G+RVGGP+GRGPLLRRLQT V G
Sbjct:  208 SKTGEYMRGMAAEARAWSARALSGAASVDNSGSSWTRGDPVDPVTMLLPDSAFGERVGGPSGRGPLLRRLQTTVYG 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160176.3866.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV22_ECTSI2.810e-1661.84Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160176contigH-elongata_contig160176:874..1317 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160176.3866.1mRNA_H-elongata_contig160176.3866.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig160176 714..1421 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig160176.3866.1 ID=prot_H-elongata_contig160176.3866.1|Name=mRNA_H-elongata_contig160176.3866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MAEQTLERRPSRQAIEPTPDHQVPEIHRRLSVAPFTKSGSFMRGIAAEAR
AWSARALAVGGTREDIDPVSMLLPEAATGQRVGGPAGRGPLLRRLQTAVD
GEYRNLAAVARRTEIFSWYLIRSGYIMDRTSCRCHAGAGIITPEKVK*
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