prot_H-elongata_contig160001.3858.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig160001.3858.1
Unique Nameprot_H-elongata_contig160001.3858.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length104
Homology
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.120e-31
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAPGLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHDD 98
            +SLLLVF+E ILPTHRSKFVQFVLFFA GRA GL +AL  +LV V  DE++PKLTRQS VAYLAS+LARASF++ S VS+AV +LL WA +Y D + D
Sbjct:  320 KSLLLVFEENILPTHRSKFVQFVLFFASGRARGLGYALVSKLVGVLGDESRPKLTRQSSVAYLASFLARASFVDPSLVSTAVQSLLDWAGQYLDQYAD 417          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A6H5JAN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN6_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.310e-31
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAPGLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHDD 98
            +SLL+VF+E ILPTHRSKFVQFVLFFA GRA GL +AL  +LV V  DE++PKLTRQS VAYLAS++ARASF++ S VS+AV +LL WA +Y D + D
Sbjct:  363 KSLLVVFEENILPTHRSKFVQFVLFFASGRARGLGYALVSKLVGVLKDESRPKLTRQSSVAYLASFVARASFVDPSLVSTAVQSLLDWAGQYLDQYAD 460          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A6P4Q5P9_GOSAR (RNA polymerase I-specific transcription initiation factor RRN3 isoform X2 n=4 Tax=Gossypium TaxID=3633 RepID=A0A6P4Q5P9_GOSAR)

HSP 1 Score: 84.7 bits (208), Expect = 5.540e-17
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            ++LL  F   +L  ++SKF QFV+F+AC   P   G+R A    L D+F  +++P+ TR S V+YLASYL+RA FL AS++SS +  L+ W  EY + HD
Sbjct:  309 ETLLQSFQVTVLSAYKSKFAQFVMFYACALDPENCGMRFAT--MLADLFVQDSQPQPTRMSAVSYLASYLSRAKFLAASSISSMLKRLVDWCLEYCEAHD 406          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: UPI0010A4F4E8 (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4F4E8)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-16
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    3 LLLVFDERILPTHRSKFVQFVLFFACGRAPG---LRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            LL  F + +L  ++SKF QFV+F+AC   PG   L+ A+   L D+F  E  P +TR S VAYLASYL+RA FL A+ V+S +  L+ W  EY  LHD
Sbjct:  313 LLTSFQKTVLNAYKSKFTQFVMFYACALDPGECGLKFAMV--LADMFICEVNPPITRMSAVAYLASYLSRAKFLSAALVTSILQRLVSWCYEYTMLHD 408          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A1U8NNU1_GOSHI (RNA polymerase I-specific transcription initiation factor RRN3-like n=20 Tax=Gossypium TaxID=3633 RepID=A0A1U8NNU1_GOSHI)

HSP 1 Score: 84.0 bits (206), Expect = 1.060e-16
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            ++LL  F   +L  ++SKF QFV+F+AC   P   G+R A    L D+F  +++P+ TR S V+YLASYL+RA FL AS++SS +  L+ W  EY + HD
Sbjct:  309 ETLLQSFRVTVLSAYKSKFAQFVMFYACALDPENCGMRFAT--MLADLFVQDSQPQPTRMSAVSYLASYLSRAKFLAASSISSMLKRLVDWCLEYCEAHD 406          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A834TV25_9FABA (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TV25_9FABA)

HSP 1 Score: 83.6 bits (205), Expect = 1.440e-16
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 0
Query:    3 LLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            LL  F + ++  ++SKF QFV+F+AC   P   GL+ A    L+D+F  E  P++T+ S VAYLASYL+RA FL A+ V+S +  L+ W  EY+ LHD
Sbjct:  313 LLESFQKTVINAYKSKFTQFVMFYACALDPEGCGLKFAAV--LLDMFISEVTPRITKMSAVAYLASYLSRAKFLSAALVASILQRLVSWCSEYSMLHD 408          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A6P5YHL2_DURZI (RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YHL2_DURZI)

HSP 1 Score: 82.4 bits (202), Expect = 3.660e-16
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            ++LL  F   ++  ++SKF QFV+F+AC   P   G+R A+   L D+F  ++ P+ TR S VAYLASYL+RA FL AS +SS +  L+ W  EY + HD
Sbjct:  309 ETLLRSFLLTVMTAYKSKFTQFVVFYACSLDPENCGMRFAI--MLADLFVQDSHPQSTRMSSVAYLASYLSRAKFLSASFISSMLKRLVDWCLEYCNTHD 406          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A438H2L6_VITVI (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H2L6_VITVI)

HSP 1 Score: 79.0 bits (193), Expect = 4.970e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            ++L+L F   +L   +SKF QFV+F+AC   P   G+R A  R L D F   T P L R S VAYLASYL+R  FL AS V++ +  L+ W  EY  +HD
Sbjct:   97 ETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRFA--RVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHD 194          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: A0A2K3MYP4_TRIPR (RNA polymerase I-specific transcription initiation factor RRN3-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MYP4_TRIPR)

HSP 1 Score: 78.6 bits (192), Expect = 5.450e-15
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 0
Query:    3 LLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHD 97
            LL+ F   +L T++SKF QFV+F+AC   P   G+  A+   L ++F     P +TR S VAYLASYL+RA FL +  V+S +  L+ W   Y  LHD
Sbjct:   47 LLMSFKRTVLNTYKSKFTQFVMFYACALDPERCGVNFAMV--LTEMFESYVNPPITRMSAVAYLASYLSRAKFLSSELVASIIQRLVDWCFAYCKLHD 142          
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Match: UPI000B8CF0F5 (RNA polymerase I-specific transcription initiation factor RRN3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CF0F5)

HSP 1 Score: 79.0 bits (193), Expect = 5.900e-15
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 0
Query:    1 QSLLLVFDERILPTHRSKFVQFVLFFACGRAP---GLRHALPRRLVDVFTDETKPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEY 92
            ++LL  F++ ++ T++SKF QF+LF+AC   P   G+R+A   +L D+F   + P +TR S VAYLASYL+R  FL AS + + +  L+ W  EY
Sbjct:  259 ETLLRSFEKYVMSTYKSKFSQFILFYACALDPEKCGVRYAT--KLADIFVCSSNPSMTRMSAVAYLASYLSRGKFLSASFIVTMLKRLVDWCLEY 351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig160001.3858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL61_ECTSI1.120e-3168.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAN6_9PHAE3.310e-3166.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4Q5P9_GOSAR5.540e-1745.00RNA polymerase I-specific transcription initiation... [more]
UPI0010A4F4E81.050e-1647.96RNA polymerase I-specific transcription initiation... [more]
A0A1U8NNU1_GOSHI1.060e-1645.00RNA polymerase I-specific transcription initiation... [more]
A0A834TV25_9FABA1.440e-1645.92RNA polymerase I-specific transcription initiation... [more]
A0A6P5YHL2_DURZI3.660e-1645.00RNA polymerase I-specific transcription initiation... [more]
A0A438H2L6_VITVI4.970e-1546.00RNA polymerase I-specific transcription initiation... [more]
A0A2K3MYP4_TRIPR5.450e-1543.88RNA polymerase I-specific transcription initiation... [more]
UPI000B8CF0F55.900e-1543.16RNA polymerase I-specific transcription initiation... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 2..98
e-value: 8.7E-27
score: 93.9
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 2..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig160001contigH-elongata_contig160001:617..1384 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig160001.3858.1mRNA_H-elongata_contig160001.3858.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig160001 617..1384 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig160001.3858.1 ID=prot_H-elongata_contig160001.3858.1|Name=mRNA_H-elongata_contig160001.3858.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
QSLLLVFDERILPTHRSKFVQFVLFFACGRAPGLRHALPRRLVDVFTDET
KPKLTRQSGVAYLASYLARASFLEASAVSSAVSTLLQWAKEYADLHDDVM
AMPA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3