prot_H-elongata_contig15996.3856.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15996.3856.1
Unique Nameprot_H-elongata_contig15996.3856.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length340
Homology
BLAST of mRNA_H-elongata_contig15996.3856.1 vs. uniprot
Match: A0A6H5K4C0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4C0_9PHAE)

HSP 1 Score: 378 bits (970), Expect = 3.710e-128
Identity = 208/336 (61.90%), Postives = 252/336 (75.00%), Query Frame = 0
Query:    7 RNVAGGLVALACGQSVEAFAIGGAFRSTV-RNAGFSGPPMA--YGAGRRPAGEANVLSDSRSGARYSTTVRMLAGTDFATCSDEDFRNYILGWTFVWSGIIPYTFIAAK---NVLGEVVTAKALPAVSKGEDSTISNQSLLLYKDPIKLIDVVNIVGRFQTYEEVQTEKTKKGLTSEYLFRDTFKASSPSLKHESLRKRKFKGWPKGPDGQPALQDAFGGDVNAMTRIIAKRPLSESAMDAVFDTFAGSPLSIVADRQETASRFFARVFKVENQLEKWRKDSTFDVRGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEPIITRYGNPLSFLGF 336
            R++ G L+ALA  +S +AFA GGA R  + R +  SG P+A      R         S SR  AR      MLAG DFATCS+ DFR YI+GWTFVWSGIIPYTFIA+K   NVLGEV+  KA   V +GED+TISNQSLLLYKDPIKL+D+VNIVGRFQT+++VQ +K   G+ S+YLFR+TFK        E+LR+ KFKGWP GPDGQPAL+DAFGGDV A++R +AKR LS++AMDAVFD+F GSPLS+VADR           FKV+NQL+ WRKD+TFD++GFEQGLLVGRLLFLFTIV+++ L LAGYGVFF++PII RYGNPL+FLGF
Sbjct:    5 RSLVGVLLALAGRRSADAFASGGASRHAIGRRSALSGAPVASIVSTTRSEMNRVRAASPSRGSAR------MLAGQDFATCSEADFRAYIIGWTFVWSGIIPYTFIASKAIQNVLGEVIGFKARSTVKEGEDATISNQSLLLYKDPIKLLDIVNIVGRFQTFDDVQDKKG--GVMSDYLFRNTFK--------ENLRRSKFKGWPAGPDGQPALKDAFGGDVKAVSRTMAKRELSDTAMDAVFDSFVGSPLSLVADR-----------FKVDNQLDNWRKDNTFDIKGFEQGLLVGRLLFLFTIVSLVGLLLAGYGVFFVQPIIIRYGNPLAFLGF 313          
BLAST of mRNA_H-elongata_contig15996.3856.1 vs. uniprot
Match: A0A835YTS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.400e-42
Identity = 94/239 (39.33%), Postives = 137/239 (57.32%), Query Frame = 0
Query:   91 NYILGW-TFVWSGIIPYTFIAAKNVLGEVVTAKALPAVSKGEDSTISNQSLLLYKDPIKLIDVVNIVGRFQTYEEVQTEKTKKGLTSEYLFRDTFKASSPSLKHESLRKRKFKGWPKGPDGQPALQDAFGGDVNAMTRIIAKRPLSESAMDAVFDTFAGSPLSIVADRQETASRFFARVFKVENQLEKWRKDS-TFDVRGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEPIITRY 327
            N ++G+    + GI+PYT +A K++  +V   +ALPAV  GE+ T+SNQ LLLY +PI+LIDV+NIV RF++++E+Q E    G  S YL R+ FK    +L          K WP   +G P  QD F    +     +  + + +SA+D VFD F+GS  + +ADR           FKVE  L+ WR D+ +F+V  FE+ LLV R   LF    ++ L+LA + VFFI P+  R+
Sbjct:   15 NTVVGFMALAFQGILPYTIMANKSIFSDVGGFRALPAVKTGEEVTVSNQPLLLYGEPIRLIDVINIVSRFESFDELQDELRDDGNRSNYLRREYFKQKVLTLAP--------KAWPADENGVPVGQDMFA---STSVATLKNKEIRDSALDVVFDVFSGSSRAYIADR-----------FKVEYNLDSWRPDARSFNVAAFEKDLLVTRYSILFIYAVLLLLQLACWSVFFINPLALRF 231          
BLAST of mRNA_H-elongata_contig15996.3856.1 vs. uniprot
Match: A0A7S2USE2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USE2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.460e-17
Identity = 64/181 (35.36%), Postives = 86/181 (47.51%), Query Frame = 0
Query:  120 TAKALPAVSKGEDSTISNQSLLLYKDPIKLIDVVNIVGRFQTYEEVQTEKTKKGLTSEYLFRDTFKASSPSLKHESLRKRKFKGWPKGPDGQPALQDAFGG-DVNAMTRIIAKRPLSESAMDAVFDTFAGSPLSIVADRQETASRFFARVFKVENQLEKWRKDSTFDVRGFEQGLLVGRLL 299
            ++ AL  +S  E  T+ N  LL Y + +KL+DVVN+VGRFQ ++ V  +       +  L R+ FK        + +RK KFK WPK   GQ      F   D     + +    LSE A+DAVFDTF             +AS    R  K E Q  +WR+   FDV  FE  LL   L+
Sbjct:   64 SSHALMFMSDAESLTVKNNGLLKYGEDVKLLDVVNVVGRFQGWDGVWEQPPPGTFFASGLSRERFK--------DKVRKEKFKSWPKDSSGQSVAAKLFPELDGPKGVKQVDSMELSEVALDAVFDTF------------NSASSHTERR-KAEEQFAQWRQGDVFDVEAFESNLLKANLI 223          
BLAST of mRNA_H-elongata_contig15996.3856.1 vs. uniprot
Match: A0A7S0KA49_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KA49_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.320e-12
Identity = 71/248 (28.63%), Postives = 109/248 (43.95%), Query Frame = 0
Query:   98 FVWSGIIPYTFIAAKNVLGEVVTAKA------LPAVSKGEDST---ISNQSLLLYKDPIKLIDVVNIVGRFQTYEEVQTEKTKKGLTSEYLF----------RDTFKASSPSLKHESLRKRKFKGWPKGPDGQPALQDAFGGDV--NAMTRIIAKR--PLSESAMDAVFDTFAGSPLSIVADRQETASRFFARVFKVENQLEKWRKDSTFDVRGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEP 322
            F+  G+IP    A K +LG ++  +A      +  VS    S    I N  LL  ++P+KL DVV IVGR +  + V   K       + L           R  FK        +++R  KF GWP      P+  +  GG    +   R ++K+  P+ + A+DAVFDT+A        D             KV+ QL+ WR ++ FD+  F    + GR +    I+T I +++  YG  F+ P
Sbjct:   82 FLGGGLIPPAIAANKLMLGTILGQRAGGDDDSVAKVSTSASSVSPDIPNSKLLFAREPVKLADVVAIVGRIRDVQSVADWKNLPSAKRDNLIDPENPPMWLPRGMFK--------DNIRNAKFVGWPV----DPSTGEVVGGIELKSEFEREVSKKSYPIPDVALDAVFDTWAWGSGIATPD-------------KVDVQLQAWRSNNGFDLNKFASAAVAGRSVTGAAILTFITIQVMVYGCLFVAP 304          
BLAST of mRNA_H-elongata_contig15996.3856.1 vs. uniprot
Match: A0A7S1BLB2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLB2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.440e-6
Identity = 59/256 (23.05%), Postives = 107/256 (41.80%), Query Frame = 0
Query:  102 GIIPYTFIAAKNVLGEVVTAKALPAVSKGEDS----------------------TISNQSLLLYKDPIKLIDVVNIVGRFQTYEEV----QTEKTKKGLTS-----EYLFRDTFKASSPSLKHESLRKRKFKGWPKGPDGQPALQDAFGGDVNAMTRIIAKRP---LSESAMDAVFDTFA-GSPLSIVADRQETASRFFARVFKVENQLEKWRKDSTFDVRGFEQGLLVGRLLFLFTIVTVIALELAGYGVFFIEP 322
            G+IP    A   ++  +    A P   +G+ S                      T+S   LL   +P+KL+DV+ ++GR     +V        TK    S     ++L R+T+K +        +R  K++GWP   DG P      GG++        ++    +S++A+D VFDT+A G+ ++      E  S +              + + TFD+  F+   ++GR +    I+  + +++  +G  FI P
Sbjct:  103 GLIPALISANTRIIESLTRKGAAPPKEEGDPSKSLDPYAALPISYVSDSGASGPTLSCSPLLFSGEPVKLVDVLAVIGRISDVNDVARWSDLPSTKLPNVSSNNPPQWLPRNTYKVN--------IRAAKWRGWPVNADGSPI----GGGELQRSEEKRLRQKGAEISDAALDVVFDTWALGAGVATPDKVSEALSSYL-------------KSNGTFDLGKFQSAAVLGRAVTAAAILFFLVIQVIAFGTLFIAP 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15996.3856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K4C0_9PHAE3.710e-12861.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTS8_9STRA3.400e-4239.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2USE2_9STRA2.460e-1735.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0KA49_9STRA3.320e-1228.63Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S1BLB2_9STRA4.440e-623.05Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 298..320
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 321..339
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..297
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..18
score: 6.0
NoneNo IPR availableTMHMMTMhelixcoord: 298..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15996contigH-elongata_contig15996:839..6533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15996.3856.1mRNA_H-elongata_contig15996.3856.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15996 283..6547 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15996.3856.1 ID=prot_H-elongata_contig15996.3856.1|Name=mRNA_H-elongata_contig15996.3856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
MTMGVRRNVAGGLVALACGQSVEAFAIGGAFRSTVRNAGFSGPPMAYGAG
RRPAGEANVLSDSRSGARYSTTVRMLAGTDFATCSDEDFRNYILGWTFVW
SGIIPYTFIAAKNVLGEVVTAKALPAVSKGEDSTISNQSLLLYKDPIKLI
DVVNIVGRFQTYEEVQTEKTKKGLTSEYLFRDTFKASSPSLKHESLRKRK
FKGWPKGPDGQPALQDAFGGDVNAMTRIIAKRPLSESAMDAVFDTFAGSP
LSIVADRQETASRFFARVFKVENQLEKWRKDSTFDVRGFEQGLLVGRLLF
LFTIVTVIALELAGYGVFFIEPIITRYGNPLSFLGFLSP*
back to top