prot_H-elongata_contig15988.3855.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15988.3855.1
Unique Nameprot_H-elongata_contig15988.3855.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D7FRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRU0_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 4.180e-13
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   11 SWVLRTGRFSSTYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTY 67
            +W + TG   ST AI +SF+FLAY+LHP IE A  RV+AY  WR +E  + V+VTTY
Sbjct:   12 TWTMPTGGVDSTLAIGLSFIFLAYILHPAIEAAYQRVRAYHAWRCIEKQQRVDVTTY 68          
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D8LC87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC87_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.960e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:   22 TYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTYPL 69
            T+AI +SFVFLAY LHP IE    +V+A R WRAVE ++ V+VTTYP+
Sbjct:   24 TFAIGLSFVFLAYFLHPRIEATYQKVRAARAWRAVEKHKRVDVTTYPM 71          
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: A0A6H5JST2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.920e-9
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   22 TYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTY 67
            T AI++SF+ LAYVLHP++  A  RV+AYR WRA+EN   VEVT Y
Sbjct:   34 TRAISLSFIVLAYVLHPLVIQAYHRVRAYRAWRAIENGRVVEVTAY 79          
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D7FRU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-8
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 0
Query:   11 SWVLRTGR-FSSTYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTYPL 69
            +WVL     F  T  I  +FV LAY LHP IE A  R++AYR WR ++  + VEVT+Y L
Sbjct:   12 TWVLPLADGFDGTLTIGWTFVLLAYFLHPAIEWAFHRLRAYRAWRCIQKRQAVEVTSYNL 71          
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Match: D7FRT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.120e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 0
Query:   22 TYAIAVSFVFLAYVLHPVIEGALGRVKAYRGWRAVENNETVEVTTY 67
            T AI +SF+ LAY LHP++  A  RV+AYR WRA+E    VEVT Y
Sbjct:   34 TRAIGLSFIGLAYFLHPLVVWAYHRVRAYRAWRAIEKGRAVEVTAY 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15988.3855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FRU0_ECTSI4.180e-1354.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LC87_ECTSI2.960e-1060.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JST2_9PHAE1.920e-960.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRU1_ECTSI1.700e-848.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRT6_ECTSI1.120e-756.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..44
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 45..69
NoneNo IPR availableTMHMMTMhelixcoord: 21..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15988contigH-elongata_contig15988:6304..6510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15988.3855.1mRNA_H-elongata_contig15988.3855.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15988 6229..6510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15988.3855.1 ID=prot_H-elongata_contig15988.3855.1|Name=mRNA_H-elongata_contig15988.3855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MSTQWYTQQMSWVLRTGRFSSTYAIAVSFVFLAYVLHPVIEGALGRVKAY
RGWRAVENNETVEVTTYPL
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