prot_H-elongata_contig15879.3804.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15879.3804.1
Unique Nameprot_H-elongata_contig15879.3804.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length139
Homology
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.600e-30
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 137
            Y II +DD TR++W+YF+R KS++ +A   FLA  R +G P    I+RSD+  +   G F  +C +  IK+EFT A +PQ NGVAERGL LI++ A A+  QAKV F  + LP   +LW +  + AC  +N TA ++N
Sbjct:  113 YPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSAN 250          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 9.250e-30
Identity = 57/138 (41.30%), Postives = 91/138 (65.94%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPP---VIMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 137
            Y++I +DD TR++ +YF++ KS++  A E++LA+ R +G P   +++RSD+  +  +G F  +CRK+ IK+EFT A++P+ +GVAER L LI+  A A+  QA   + G   P    LW +    +C+ LNCT+TTSN
Sbjct:   55 YTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGA--PNYPSLWAEAIAWSCNALNCTSTTSN 190          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.010e-29
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 139
            Y++I RDD TR++ ++F++ KS++  A E +LAD R    P    + R+D   + + G+F E+CR++ IK+EFT  NTP+ NGVAER L L+  +A AS  QAK  F   D P    LW +  + ACH +NCTATT N G
Sbjct:   11 YTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFVARTDGGGEFQ-GQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFP--DAPVSPGLWAEAISCACHQMNCTATTGNPG 147          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.440e-29
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 137
            Y +I +DD TR +W+YF+R KS++ +A   FLA+ R  G P    I+RSD+  +   G F  +C +  IK+EFT A++P+ NGVAERGL LI++ A A+  QAKV F  + LP   RLW +  + AC  LN TA ++N
Sbjct:  496 YPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSAN 633          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.450e-29
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 137
            Y +I +DD TR +W+YF+R KS++ +A   FLA+ R  G P    I+RSD+  +   G F  +C +  IK+EFT A++P+ NGVAERGL LI++ A A+  QAKV F  + LP   RLW +  + AC  LN TA ++N
Sbjct:  472 YPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSAN 609          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 7.630e-29
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 139
            Y++I R D TR++ ++F+++KSE+ +ALE+F+AD R  G P    ++RSD+  Q   G+F + CRK  IK+E T  +TP+ NGVAER L +I   A AS  QAK  F   D P    LW +    ACH LNCTATT+N G
Sbjct:   42 YTLIIRCDATRWTRVFFLKRKSEAADALEQFIADYRSEGTPCEVYVVRSDNEFQ---GQFSKTCRKWGIKQEKTPPHTPKYNGVAERWLGIISDAALASRIQAKEMFP--DAPTDPALWAEAIACACHQLNCTATTANPG 176          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.750e-29
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 139
            Y++I RDD +R++ ++F++ KS++    EKFLAD R +G P    I R+D   + + G+F E+CR+H IK+EFT  +TP+ NGVAER L LI   A AS  QA   F   D P    LW +  + ACH LNCTAT SN+G
Sbjct:  721 YTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQ-GQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFP--DAPNHPGLWAEAISCACHQLNCTATKSNEG 857          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.210e-28
Identity = 61/138 (44.20%), Postives = 87/138 (63.04%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPVIM---RSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSN 137
            Y +I +DD TR +W+YF+R KS++ +A   FLA  R  G P ++   RSD+  +   G F  +C +  IK+EFT A++PQ NGVAERGL LI++ A A+  QAKV F  + LP   +LW +  + AC  LN TA ++N
Sbjct:  349 YPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSAN 486          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.310e-28
Identity = 62/140 (44.29%), Postives = 88/140 (62.86%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPV---IMRSDDAPQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 139
            Y++I RDD TR++ ++F++ KS++  A E++LAD R    P    + R+D   + + G+F E+CR+  IK+EFT  NTP+ NGVAER L L+  +A AS  QAK  F   D P    LW +  + ACH +NCTATT N G
Sbjct:  215 YTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQ-GQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFP--DAPVSPGLWAEAISCACHQMNCTATTGNPG 351          
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.560e-28
Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = 0
Query:    3 YSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPP---VIMRSDDAP----QLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAHQAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG 139
            Y++I RDD +R++ ++F++ KS +    EKF AD R  G P    I R+D       Q  +G+F E+CR+H IK+EFT  NTP+ NGVAER L LI   A AS  QA   F   D P   RLW +  + ACH LNCTAT SN+G
Sbjct:   42 YTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRTKGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFP--DAPNHPRLWAEAISCACHQLNCTATKSNEG 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15879.3804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE3.600e-3044.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7U9_9PHAE9.250e-3041.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE1.010e-2944.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K622_9PHAE3.440e-2944.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE3.450e-2944.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE7.630e-2946.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE8.750e-2946.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE1.210e-2844.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE1.310e-2844.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K293_9PHAE1.560e-2846.53Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..138
e-value: 4.8E-17
score: 63.8
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 3..89
e-value: 9.4E-11
score: 41.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..139
score: 13.399
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..86
NoneNo IPR availablePANTHERPTHR11439:SF284coord: 1..86
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15879contigH-elongata_contig15879:1814..2230 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15879.3804.1mRNA_H-elongata_contig15879.3804.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15879 1802..2230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15879.3804.1 ID=prot_H-elongata_contig15879.3804.1|Name=mRNA_H-elongata_contig15879.3804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MKYSIIFRDDTTRYSWLYFMRKKSESPNALEKFLADTREHGPPVIMRSDD
APQLKDGRFDEICRKHSIKREFTSANTPQLNGVAERGLTLIDKTAKASAH
QAKVSFVGMDLPPMHRLWTDGYNNACHMLNCTATTSNKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf