prot_H-elongata_contig158787.3803.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158787.3803.1
Unique Nameprot_H-elongata_contig158787.3803.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
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BLAST of mRNA_H-elongata_contig158787.3803.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.970e-24
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 0 
Query:    1 RPVKLHLWDVAGSQLTADPCHHALIADGADGVLYVMDVTNRESLQAVDGWDRALAK 56
            RPVKLHLWDVAGSQLTA PCHH LI  GA+GVLYVMDVT+RESLQAVD WD+AL+K
Sbjct:   59 RPVKLHLWDVAGSQLTAQPCHHGLIGQGAEGVLYVMDVTSRESLQAVDDWDQALSK 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158787.3803.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE2.970e-2483.93SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..64
e-value: 1.2E-8
score: 36.3
IPR001806Small GTPasePFAMPF00071Rascoord: 2..57
e-value: 4.2E-5
score: 23.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158787contigH-elongata_contig158787:886..1083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158787.3803.1mRNA_H-elongata_contig158787.3803.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158787 886..1083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158787.3803.1 ID=prot_H-elongata_contig158787.3803.1|Name=mRNA_H-elongata_contig158787.3803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RPVKLHLWDVAGSQLTADPCHHALIADGADGVLYVMDVTNRESLQAVDGW
DRALAKVVFVIGVNYY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase