prot_H-elongata_contig15875.3801.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15875.3801.1
Unique Nameprot_H-elongata_contig15875.3801.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length385
Homology
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BLAST of mRNA_H-elongata_contig15875.3801.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 8.730e-89
Identity = 188/409 (45.97%), Postives = 245/409 (59.90%), Query Frame = 0 
Query:    2 IPAA-VRSLSTKPWLPRLGGLIITTATVVMTV-FQGPSTAKSSP---------VGYQTLYAS---RG--------QSLSILGANRILQEEDDMVDEHLITYDTQLQLFMCNPSLIEEGNDAYLVDNDRLAVALSRVLGLGQSDTDDIEVTMKTGPLDAEDDTYMCDTGGMLQWHAMINYDADDAAVLGTTPAVMAAQANDYVTYSSNDFKALLSAFINDEYASDAQDVDVAASVIVVGTLGWIVTFPAETTSVREAETSGSLDGFGIRVAGDASLWTWWMWLAFSLVLACCMVPVCCCLCRRI---KNAPTKALKTTTHDERSGSGDSD--EVRSREWDSSELDLE-DYSEYEDDEMKRDYDDADRSSEEPTSCSSSNRLGRRS--GQALIKETGKRSAWEQPVEASSR 380
            +PAA   S S  PW+ R  GL+I  A  V TV F   +TA +S          VG Q+LYAS   RG        +  S+    R+LQEE   V   ++ Y T+LQ+FMCNPSL  EGNDA+LVD   LA ALS + G+ Q+D  DI VT+KT P+D +D +YMCDT GMLQWHA + Y A  A    TTPAV+AAQANDYV YSS+ FKALL+ FIN EYA + + V+++A  I++ T+GWIVTFPAE +  +E  T+GS DG  + +  D+SLW WW+WL ++L++AC                K A    L  T    R G G+    ++R  EW  +ELD E DY  Y+  EMKR+YD A R  E PT+   S+R G++S   QA ++E GK+SAW QP   SSR
Sbjct:    1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEVETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLIAT----RKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGRGVE-PTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQPSGNSSR 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15875.3801.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI8.730e-8945.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 257..279
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 280..385
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..256
NoneNo IPR availableTMHMMTMhelixcoord: 256..278

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15875contigH-elongata_contig15875:1928..5119 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15875.3801.1mRNA_H-elongata_contig15875.3801.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15875 1928..5119 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15875.3801.1 ID=prot_H-elongata_contig15875.3801.1|Name=mRNA_H-elongata_contig15875.3801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=385bp
SIPAAVRSLSTKPWLPRLGGLIITTATVVMTVFQGPSTAKSSPVGYQTLY
ASRGQSLSILGANRILQEEDDMVDEHLITYDTQLQLFMCNPSLIEEGNDA
YLVDNDRLAVALSRVLGLGQSDTDDIEVTMKTGPLDAEDDTYMCDTGGML
QWHAMINYDADDAAVLGTTPAVMAAQANDYVTYSSNDFKALLSAFINDEY
ASDAQDVDVAASVIVVGTLGWIVTFPAETTSVREAETSGSLDGFGIRVAG
DASLWTWWMWLAFSLVLACCMVPVCCCLCRRIKNAPTKALKTTTHDERSG
SGDSDEVRSREWDSSELDLEDYSEYEDDEMKRDYDDADRSSEEPTSCSSS
NRLGRRSGQALIKETGKRSAWEQPVEASSRSPPGK
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