prot_H-elongata_contig158653.3796.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158653.3796.1
Unique Nameprot_H-elongata_contig158653.3796.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length36
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158653.3796.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 1..36
e-value: 1.2E-10
score: 43.5
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 1..36
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 1..36
e-value: 8.3E-11
score: 42.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..36
score: 11.663

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158653contigH-elongata_contig158653:210..317 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158653.3796.1mRNA_H-elongata_contig158653.3796.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158653 180..317 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158653.3796.1 ID=prot_H-elongata_contig158653.3796.1|Name=mRNA_H-elongata_contig158653.3796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MKPTEISKVLGETWKKMDAEAKAPYTERAQADKERY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom