prot_H-elongata_contig15820.3776.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15820.3776.1
Unique Nameprot_H-elongata_contig15820.3776.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length109
Homology
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 8.850e-28
Identity = 58/106 (54.72%), Postives = 82/106 (77.36%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTP-EASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEIKSGTT 105
            MQDAGMA++ES +ADI++N F++V++GIR+SLG   N V++N+F++ S  GLYTY+GSD P +  SDGRPSDN F +N I N   GVKIK+ +DT+IT  + +GT+
Sbjct:  367 MQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS 472          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.930e-27
Identity = 54/104 (51.92%), Postives = 79/104 (75.96%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEIKSGT 104
            M DAG+A++ESF+ADIHDN    V++GIR+SLG G N+VYDN F++CS +GLYTY GSD P+ S+ GRP+ N+F +N ++N+  GVK K +++ ++T    +GT
Sbjct:  312 MPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVSN-GRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGT 414          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 4.080e-25
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 0
Query:    7 AIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEAS-SDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 100
            A+MESF A+I+DNT  N +YGIR+SLG  +N ++DN FD  S YGLYTYKGSD P+ S +DGR  DNSF  NTISNT+  +KIK+ +D   T  +
Sbjct:  710 ALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNV 804          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.040e-24
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSD--GRPSDNSFYDNTISNTETGVKIKKANDTLIT 97
            M+DAGMAIMES  A IHDNTFTNV+YGIR+S+G   N V +N F EC +YG+YTY+G+D PEAS D  G   DN+F+ NT+   E GVKI+KA   + T
Sbjct:  697 MKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFT 792          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LDB5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.940e-24
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSD--GRPSDNSFYDNTISNTETGVKIKKANDTLIT 97
            M+DAGMAIMES  A I+DNTFTNV+YGIR+S+G   N V +N F EC +YG+YTY+G+D PEAS D  G   DN+F+ NT+   E GVKI+KA     T
Sbjct:  758 MEDAGMAIMESMGAHIYDNTFTNVKYGIRLSVGASRNVVENNKFSECDQYGIYTYQGNDEPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIAFT 853          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.510e-24
Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 0
Query:    7 AIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 100
            A +ESFDADI+DN   N +YGIR+SLG G+N + +N FD  SKYGLYTYKGSD+P+ S+ GRP  N F  NT+SNT+ GV  K+ +D +    +
Sbjct:  544 AFLESFDADIYDNRIVNCKYGIRLSLGSGDNDITNNTFDNISKYGLYTYKGSDSPDVSN-GRPKGNKFEGNTVSNTKIGVLGKEGDDNIFKNNV 636          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 8.640e-24
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEA-SSDGRPSDNSFYDNTISNT--ETGVKIKKANDTLITGEIKSG 103
            MQDAGMA+MES+DA+I+DN+FTN  YGIR+SLG G N + +N+F   ++YGLYTY GSD P+  +S+GRPSDN F  NTI       GV IK+ +  +    + +G
Sbjct:  490 MQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTG 595          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.500e-22
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKAND 93
            MQDAG+A++ESFDA I+ N     +YGIR+SLG GNN VY N F + S+YGLYTY+GSD P+ S DGRPS N    N + +   GVKIK+ +D
Sbjct:  742 MQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDD 833          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: A0A6H5J9X8_9PHAE (MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.100e-21
Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:    1 MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTP-EASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGE 99
            MQD GMA++ES +ADI++N F++V++GIR+SLG  +N V++N+F+E          GSD P +  SDG PSDN F +  I N   GVKIK+ +D +ITGE
Sbjct:    1 MQDTGMALLESINADIYNNEFSSVKFGIRLSLGSSDNHVHENLFEE----------GSDEPTDGVSDGHPSDNLFGNKRILNAAKGVKIKEGDDAVITGE 90          
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.860e-18
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 0
Query:    3 DAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKYGLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI 100
            DAG+A++ESF+AD+ +NTF N +YG+R+S+G  +N   +N+    SKY  YTY GSD P+  S GR  +N F  N+ S  E  +KIK+A+ T     +
Sbjct:  361 DAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNV 458          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15820.3776.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI8.850e-2854.72Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE2.930e-2751.92MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FWE8_ECTSI4.080e-2556.84Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE1.040e-2458.59MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LDB5_ECTSI1.940e-2457.58Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LRN0_ECTSI6.510e-2454.26Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G8D9_ECTSI8.640e-2451.89Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LC73_ECTSI1.500e-2255.91Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5J9X8_9PHAE8.100e-2149.00MEP24 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI3.860e-1843.88Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 34..56
e-value: 56.0
score: 12.6
coord: 11..32
e-value: 29.0
score: 13.6
coord: 69..90
e-value: 240.0
score: 10.5
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..107
e-value: 5.2E-11
score: 43.9
IPR007742Periplasmic copper-binding protein NosD, beta helix domainPFAMPF05048NosDcoord: 3..98
e-value: 1.4E-10
score: 40.9
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 4..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15820contigH-elongata_contig15820:2367..2922 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15820.3776.1mRNA_H-elongata_contig15820.3776.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15820 2367..2939 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15820.3776.1 ID=prot_H-elongata_contig15820.3776.1|Name=mRNA_H-elongata_contig15820.3776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MQDAGMAIMESFDADIHDNTFTNVEYGIRISLGGGNNTVYDNVFDECSKY
GLYTYKGSDTPEASSDGRPSDNSFYDNTISNTETGVKIKKANDTLITGEI
KSGTTNGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR007742NosD_dom
IPR011050Pectin_lyase_fold/virulence