prot_H-elongata_contig1581.3772.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig1581.3772.1
Unique Name	prot_H-elongata_contig1581.3772.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	110

Homology

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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 3.960e-48
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:   51 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 160

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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.070e-47
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:   22 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 131

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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.360e-47
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  153 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 262

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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 9.200e-46
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  276 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 385

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BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.640e-45
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+L AFSDANW ++PD  RSTSSY++M++ AP+SFK GLQ LT  STMEAEL+AAALTMKEAVFCSNM+ ELGF + FG VPLYI+NT+ LHV GN+ YS R KHI
Sbjct:  372 KRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHI 481

[Close]

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.570e-44
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  836 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 945

[Close]

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.380e-43
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ MLANAP+SF+ GLQGLTA STMEAELVA+AL MKEAVFCSNM+ ELG  + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct:  497 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 606

[Close]

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.860e-41
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+LA FSD+NW N+PD G+STSSY+ +LANAP+SF+ GLQGLTA STMEAELVA+AL M EAVF SNM+ ELGF + F  +P+Y DNT+ LH  GNR++S R KHI
Sbjct: 1505 KKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHI 1614

[Close]

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 6.160e-40
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF+L AF+D+NWGN+PD G+STSS++ ML +AP++FK GLQ LT QSTME ELVAAAL +KEAVFCSN++ ELGF +    VPLY DNT+ LH  GNR+YS   KHI
Sbjct:  559 KRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHI 668

[Close]

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.390e-38
Identity = 72/110 (65.45%), Postives = 87/110 (79.09%), Query Frame = 0

Query:    1 KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQSTMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGNRTYSPRAKHI 110
            K+GGF L A SDANWGN+PD  +S SSYI+M++ AP+SFK GLQ LTA ST+EAELVAAAL MKE +FC+NM+ ELGF   F S PLYI NT+ LHV GN+T+S R KH+
Sbjct:  530 KRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHV 638

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot

BLAST of mRNA_H-elongata_contig1581.3772.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KMK0_9PHAE	3.960e-48	69.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCX7_9PHAE	2.070e-47	69.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KNV2_9PHAE	2.360e-47	69.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5U2_9PHAE	9.200e-46	69.09	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5J6N1_9PHAE	1.640e-45	70.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KNH5_9PHAE	5.570e-44	69.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JME8_9PHAE	2.380e-43	68.18	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	2.860e-41	66.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JG39_9PHAE	6.160e-40	64.55	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KBU1_9PHAE	1.390e-38	65.45	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..110
None	No IPR available	PANTHER	PTHR11439:SF275		coord: 6..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig1581	contig	H-elongata_contig1581:15861..16190 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig1581.3772.1	mRNA_H-elongata_contig1581.3772.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig1581 15861..16190 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig1581.3772.1 ID=prot_H-elongata_contig1581.3772.1|Name=mRNA_H-elongata_contig1581.3772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
KQGGFRLAAFSDANWGNHPDIGRSTSSYIVMLANAPISFKVGLQGLTAQS
TMEAELVAAALTMKEAVFCSNMILELGFDESFGSVPLYIDNTSALHVAGN
RTYSPRAKHI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039537	Retrotran_Ty1/copia-like