prot_H-elongata_contig157855.3758.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig157855.3758.1
Unique Nameprot_H-elongata_contig157855.3758.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length201
Homology
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BLAST of mRNA_H-elongata_contig157855.3758.1 vs. uniprot
Match: D7FK64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK64_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.130e-30
Identity = 103/212 (48.58%), Postives = 120/212 (56.60%), Query Frame = 0 
Query:    1 GDNLRFREHRKLISGRLSGRKRAEQLD--ASAGDDGGKIL--SSLAAYGSAAAGAVEEDGGASPAAVVAVAEAQGMEKAEDAVPPMRGTGDEKDEAVEMEWWDEAFLTKEMRDDKAVGKLMPETNNAEVLYELLGLKNSKFFKYVQHPKKPQPAVGVSAGGKAAGTXXXXXXXXXGK-------EETEAMKVYLTKKERKRIRRTTRMERER 201
            GDNLRFREHRK +SGR+SGR  AEQLD  A  G  GG     SSL+ Y      + + +                     +AVP +R  G + +E   +EWWDEAFLTKE RD KA GKL  E    + LY +L L+N+K FKY+QHPKKP               XXXXXXXXX          +  AMKVYLTKKERKRIRRTTRMERER
Sbjct:  229 GDNLRFREHRKFLSGRMSGRVNAEQLDTPAGGGSGGGPTAGTSSLSVY------SAQAEAXXXXXXXXXXXXXXXXXXXAEAVPALREVGQDLEE---IEWWDEAFLTKETRDAKAAGKLEAEACTTDALYPVLLLENAKTFKYIQHPKKPLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSDAAAMKVYLTKKERKRIRRTTRMERER 431
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BLAST of mRNA_H-elongata_contig157855.3758.1 vs. uniprot
Match: A0A6H5KAN0_9PHAE (PRP3 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.510e-24
Identity = 73/151 (48.34%), Postives = 86/151 (56.95%), Query Frame = 0 
Query:    1 GDNLRFREHRKLISGRLSGRKRAEQLDASAGDDGGKILS----SLAAYGSAAAGAVEEDGGASPAAVVAVAEAQGMEKAEDAVPPMRGTGDEKDEAVEMEWWDEAFLTKEMRDDKAVGKLMPETNNAEVLYELLGLKNSKFFKYVQHPKKP 147
            GDNLRFREHRK +SGR+SGR  AEQLD   G            SL+ Y + A    E D  A+             E AE AVP +R  G +    VE+EWWDE+FLTKE RD KA GKL  E    + LY  L L+N+K FKY+QHPKKP
Sbjct:  299 GDNLRFREHRKFLSGRMSGRVNAEQLDPPGGXXXXXXXXXXXXSLSVYSAQA----EADESAAXXXXXXXXXXXXKEAAE-AVPALREAGQD---LVEIEWWDESFLTKETRDAKAAGKLEAEACTTDALYPGLLLENAKTFKYIQHPKKP 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157855.3758.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK64_ECTSI1.130e-3048.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAN0_9PHAE3.510e-2448.34PRP3 domain-containing protein (Fragment) n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013881Pre-mRNA-splicing factor 3PFAMPF08572PRP3coord: 71..201
e-value: 9.5E-15
score: 54.9
IPR027104U4/U6 small nuclear ribonucleoprotein Prp3PANTHERPTHR14212U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATEDcoord: 70..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157855contigH-elongata_contig157855:415..1422 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157855.3758.1mRNA_H-elongata_contig157855.3758.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig157855 415..1422 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig157855.3758.1 ID=prot_H-elongata_contig157855.3758.1|Name=mRNA_H-elongata_contig157855.3758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
GDNLRFREHRKLISGRLSGRKRAEQLDASAGDDGGKILSSLAAYGSAAAG
AVEEDGGASPAAVVAVAEAQGMEKAEDAVPPMRGTGDEKDEAVEMEWWDE
AFLTKEMRDDKAVGKLMPETNNAEVLYELLGLKNSKFFKYVQHPKKPQPA
VGVSAGGKAAGTGKGGGEGGGGKEETEAMKVYLTKKERKRIRRTTRMERE
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013881Pre-mRNA_splic_Prp3
IPR027104Prp3