prot_H-elongata_contig157816.3756.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig157816.3756.1
Unique Nameprot_H-elongata_contig157816.3756.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length87
Homology
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 8.270e-15
Identity = 36/85 (42.35%), Postives = 57/85 (67.06%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD E GTL+I+Q  + ++M+ ++ + +   IPASPG+DLGPR + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct: 1444 FDGCAIERDIEAGTLKISQTAYIDSMVERFDVKSTLRIPASPGVDLGPRRDDEKGGEWPV---REAIGSMMWVSTFSRPDVSFAV 1525          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JAZ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ6_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.120e-14
Identity = 35/86 (40.70%), Postives = 58/86 (67.44%), Query Frame = 0
Query:    1 MYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            M+ GCA ERD E GTL++++  + ++M+  + + + F IPASPG+DLGP+ + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct:  944 MFDGCAIERDVEAGTLKLSKTAYIDSMVKCFDVQSTFRIPASPGVDLGPKRDDEKGGEWPV---REAIGSMMWVSTFSRPDVSFAV 1026          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.820e-14
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD E GTL I+Q  + ++M+ ++ + +   IPASPG+DLGP+ + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct:  522 FDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPV---REAIGSIMWVSTFSRPDVSFAV 603          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.020e-14
Identity = 34/85 (40.00%), Postives = 58/85 (68.24%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD E GTL I+Q  + ++++ ++ + +  +IPASPG+D+GP+ + E+GG   +   R  +GS+M +S  +RPDI+ A+
Sbjct:  231 FDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPV---REAIGSMMWVSTFSRPDISFAV 312          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.850e-14
Identity = 34/85 (40.00%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD E G L+I+Q  + ++M+ ++ + +   IPASPG+DLGP+ + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct:  698 FDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGEWPV---REAIGSMMWVSTFSRPDVSFAV 779          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.430e-13
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD   GTL I+Q  + ++M+ ++ + +   IPASPG+DLGP+ + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct:  681 FDGCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPASPGVDLGPKRDDEKGGEWPV---REAIGSMMWVSTFSRPDVSFAV 762          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5KYI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.450e-13
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD E GTL I+Q  + ++M+ ++   +   IPASPG+DLGP+ + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct:  925 FDGCAIERDVEAGTLRISQTAYIDSMLIRFDEQSTSRIPASPGVDLGPKRDDEKGGEWSV---REAIGSMMWVSTFSRPDVSFAV 1006          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.380e-13
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 0
Query:    2 YTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            + GCA ERD E GTL I+Q  + ++M+ ++ + +   IPASPG+DLGP+ + E  G   +   R  +GS+M +S  +RPD++ A+
Sbjct:  642 FDGCAIERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKRGEWPV---REAIGSMMWVSTFSRPDVSFAV 723          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.730e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 0
Query:    4 GCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL 86
            GCA ERD + GT  I+Q    ++M+ ++ + + F IPASPG+DLGP+ + E GG   +   R  +GS+M +S  +RPD++ A+
Sbjct:  566 GCAIERDVQAGTFHISQTANIDSMMKRFDVQSTFRIPASPGVDLGPKRDDEKGGEWPV---REAIGSMMWVSTFSRPDVSFAV 645          
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.160e-12
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    5 CAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANA 85
            CA +RD E GTL I++  + ++M+ ++ + +   IPASPG+DLGPR + E GG   +   R  +GS+M +S  +RPD++ A
Sbjct:   51 CAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPASPGIDLGPRRDDEKGGEWPV---REAIGSMMWVSAFSRPDVSFA 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTI6_9PHAE8.270e-1542.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAZ6_9PHAE1.120e-1440.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE2.820e-1441.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE7.020e-1440.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE9.850e-1440.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KYH9_9PHAE3.430e-1340.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KYI5_9PHAE3.450e-1341.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQU4_9PHAE6.380e-1340.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSK5_9PHAE8.730e-1340.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K123_9PHAE1.160e-1240.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157816contigH-elongata_contig157816:576..836 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157816.3756.1mRNA_H-elongata_contig157816.3756.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig157816 522..1082 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig157816.3756.1 ID=prot_H-elongata_contig157816.3756.1|Name=mRNA_H-elongata_contig157816.3756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
MYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPR
VEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*
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