prot_H-elongata_contig157396.3741.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig157396.3741.1
Unique Nameprot_H-elongata_contig157396.3741.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
[Close]
BLAST of mRNA_H-elongata_contig157396.3741.1 vs. uniprot
Match: A0A6H5KNR8_9PHAE (Smr domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNR8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.010e-19
Identity = 46/92 (50.00%), Postives = 58/92 (63.04%), Query Frame = 0 
Query:    1 MAINCLGKTKRWAEAISVFERMSTDLDHQADGMTYSVVIXXXXXXXXXXXXXXXXXXXXXXLDPTTFQSNPAAMTSSLNSAINACDIAGRYQ 92
            M INCLGKTKRW EA++VFERM T+L H+ D MT+ +VI                       +P  F+SNP A+T+ LNSAINACDIAGR++
Sbjct:  339 MGINCLGKTKRWEEAVAVFERMPTELGHEPDSMTHGLVINSLAVSGRTEEAIELFDSMCKSTNPI-FKSNPPALTACLNSAINACDIAGRWE 429
[Close]
BLAST of mRNA_H-elongata_contig157396.3741.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.700e-19
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 0 
Query:    1 MAINCLGKTKRWAEAISVFERMSTDLDHQADGMTYSVVIXXXXXXXXXXXXXXXXXXXXXXLDPTTFQSNPAAMTSSLNSAINACDIAGRYQ 92
            M INCLGKTKRW EA++VFERM T+L H+ D MT+ +V+                       +P  F+SNP A+T+ LNSAINACDIAGR++
Sbjct:  194 MGINCLGKTKRWEEAVAVFERMPTELGHEPDSMTHGLVVNSLALSGRTEEAIELFDSMCKSTNPI-FKSNPPALTACLNSAINACDIAGRWE 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157396.3741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNR8_9PHAE2.010e-1950.00Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIK7_ECTSI2.700e-1948.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..93
e-value: 1.5E-15
score: 58.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 4..64
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 34..60
e-value: 3.2E-7
score: 30.1
coord: 3..23
e-value: 0.0083
score: 16.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 34..60
e-value: 8.0E-8
score: 30.0
coord: 3..24
e-value: 8.2E-5
score: 20.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..25
score: 6.697
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 31..61
score: 10.545

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157396contigH-elongata_contig157396:397..1153 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157396.3741.1mRNA_H-elongata_contig157396.3741.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig157396 370..1153 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig157396.3741.1 ID=prot_H-elongata_contig157396.3741.1|Name=mRNA_H-elongata_contig157396.3741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MAINCLGKTKRWAEAISVFERMSTDLDHQADGMTYSVVINALALSGRWEE
ALALYDRMIKSLDPTTFQSNPAAMTSSLNSAINACDIAGRYQT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat