prot_H-elongata_contig15672.3697.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15672.3697.1
Unique Nameprot_H-elongata_contig15672.3697.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length324
Homology
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BLAST of mRNA_H-elongata_contig15672.3697.1 vs. uniprot
Match: D7G3Y1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.740e-7
Identity = 50/86 (58.14%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:  245 SSRRRSGWGSGRSYSSASSARGSSLSGFGGTIPSPVLEEEEGSSSSEGS------GTAGFRDERKPKKSRSRGFVKPVRIRKVVTK 324
            SSR RS WG  RS SS+SSARGSSL GFGG +PSPV E  EGS  S         G  G  D  K K + SRGFVKPVR+RKV++K
Sbjct:    5 SSRGRS-WG--RSNSSSSSARGSSL-GFGGLLPSPVPEGSEGSGGSXXXXXXXXXGGFGREDRPKAKNNNSRGFVKPVRVRKVMSK 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15672.3697.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y1_ECTSI5.740e-758.14Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15672contigH-elongata_contig15672:6572..7543 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15672.3697.1mRNA_H-elongata_contig15672.3697.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15672 6572..7543 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15672.3697.1 ID=prot_H-elongata_contig15672.3697.1|Name=mRNA_H-elongata_contig15672.3697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp
SLSPAHGSSKISKRSASLDSPAVVKIAANEPPDSNFMTRRAERRAARDRE
RDRARREADEAAAQAAEESARAACARKATGGGGHVGGYRRAPARSRSLGC
ERIAGGERVDSGGDGEDGDDDGCRERRPQMSRPYPRPSEKMLTKPHRSKI
EEWEEKRKTGTASSRSDTANRYQRSQRGRGTRPGSEGGQPFDPATGPWPI
WTQHNAGTPGSRSGSSDTSSVSRGSSTSSSYSSSSYGSSVGSSSSSRRRS
GWGSGRSYSSASSARGSSLSGFGGTIPSPVLEEEEGSSSSEGSGTAGFRD
ERKPKKSRSRGFVKPVRIRKVVTK
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