prot_H-elongata_contig15668.3695.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15668.3695.1
Unique Nameprot_H-elongata_contig15668.3695.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length289
Homology
BLAST of mRNA_H-elongata_contig15668.3695.1 vs. uniprot
Match: A0A6H5K203_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K203_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.160e-13
Identity = 89/218 (40.83%), Postives = 107/218 (49.08%), Query Frame = 0
Query:   50 APAPSSPFLGTEKAPSPXXXXXGPSRVPTWLDHTAGREPARPHFMRSAAQQQQPRATPRKSTTSTAVPASRLEATRQAALPVAAVRFAAHSEPVALSPEESAK-EAKRRAFIEDRARIQARISARNSKADEETSSWKPSXXXXXXRTITPEAQQIVQAQQQGASFGAGVSGNAAGTAGPFSGNARFLDGVE-EAGAAAGYVTAEEDS-AWLERERAQR 264
            AP PSS F G    P          RVPTW    A  EPA PHFMR+A+ QQ+ RA   KS  +TA           A   V     +   +   +S EE+AK EAKR AF+EDRARIQARI+A  SK      +  P           P AQ I   Q Q        S  +AG  G FSG+  FLD V  + GA AG   A++++ AWLERER QR
Sbjct:  165 APQPSSAF-GKAAPPXXPATVEDAGRVPTWQGR-AEPEPAWPHFMRNASPQQKSRAPSAKSAPATAAATVVPVGGAAAVSAVTPGEASGGGKGEGVSQEEAAKKEAKRLAFMEDRARIQARIAA--SKGGRAAPASSPKPTPTTTHQSAPAAQDI---QAQKPEPFETPSAASAGEGGSFSGSPSFLDSVGGDVGAGAGGGRADDEAEAWLEREREQR 375          
BLAST of mRNA_H-elongata_contig15668.3695.1 vs. uniprot
Match: D8LIT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.240e-12
Identity = 104/294 (35.37%), Postives = 128/294 (43.54%), Query Frame = 0
Query:   13 QQQQESASQARRNFGEG-GGAPAARGGVSRVTAP-PFAAAPAPSSPFLGTEKAPSPXXXXXGPSRVPTWLDHTAGREPARPHFMRSAAQQQQPRATPRKSTTSTAVPASRLEATRQAALPVAAVRFAAHSEPVALSPEESA-KEAKRRAFIEDRARIQ-------------------------------------ARISARNSKADEETSSWKPSXXXXXXRTITPEAQQIVQAQQQGASFGAGVSGNAAGTAGPFSGNARFLDGVE-EAGAAA-GYVTAEEDSAWLERERAQR 264
            QQQQ+  S+   N G G GG   A G    + AP P++A         G    P P        RVPTW       EPARPHFMR+A+ QQ+PRA+P K+  +TA           A   V     +   +   +S EE+A KEAKR AF+EDRARIQ                                     ARI+A  SK      +  P       R  TP AQ I    QQ   F   ++ +A G  G FSG+  FLDGV  + GA A G    +E  AWLERER QR
Sbjct:   82 QQQQQPHSRTHPNIGAGMGGGMGADGRAKAMKAPQPYSA--------FGKAAPPPPPATVEDAGRVPTWQGRGEP-EPARPHFMRNASPQQKPRASPAKTVPATAAATVVPVGGAAAVSAVTPGEASGGGKGEGVSQEEAARKEAKRLAFMEDRARIQYLYRVRRDMEPAREVGDQASGGSIPMLDFRPQRDGRKARIAA--SKGGRAAPASFPKPTPTTTRQSTPAAQDIKA--QQPELFETPLAASA-GEGGTFSGSPSFLDGVGGDVGAGAEGGRADDEAEAWLEREREQR 361          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15668.3695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K203_9PHAE7.160e-1340.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIT5_ECTSI4.240e-1235.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 257..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15668contigH-elongata_contig15668:3957..7696 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15668.3695.1mRNA_H-elongata_contig15668.3695.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15668 3936..7696 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15668.3695.1 ID=prot_H-elongata_contig15668.3695.1|Name=mRNA_H-elongata_contig15668.3695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MKVSPIKVSDTFQQQQESASQARRNFGEGGGAPAARGGVSRVTAPPFAAA
PAPSSPFLGTEKAPSPPPPAPGPSRVPTWLDHTAGREPARPHFMRSAAQQ
QQPRATPRKSTTSTAVPASRLEATRQAALPVAAVRFAAHSEPVALSPEES
AKEAKRRAFIEDRARIQARISARNSKADEETSSWKPSPAPAPARTITPEA
QQIVQAQQQGASFGAGVSGNAAGTAGPFSGNARFLDGVEEAGAAAGYVTA
EEDSAWLERERAQREQKERERQEAAERERKRRMEEEAR*
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