prot_H-elongata_contig156629.3693.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig156629.3693.1
Unique Name	prot_H-elongata_contig156629.3693.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	100

Homology

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.210e-18
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 100
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A   L   + DY   KG+  ++ + RTDGGGE+ GQF    R  GIK+E TPP+TP+
Sbjct:  647 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPK 744

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.060e-18
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 100
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A       + DY   KG+  ++ + RTDGGGE+ GQF    R  GIK E TPP+TP+
Sbjct:   23 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPK 120

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.560e-18
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTP 99
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A       + DY   +G+  K+ + RTDGGGE+ GQF    R  GIK+E TPP+TP
Sbjct:  483 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTP 579

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.170e-18
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPK-GLKIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 100
            RLF++L G      +GGN + ++  DD TR+  V FLKHKS+A  A    + DY A     ++ V RTDGGGE+ GQF    R  GIK+E TPP TP+
Sbjct:  196 RLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPK 293

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5JF14_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF14_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.040e-17
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPK-GLKIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTP 99
            RLF+DL G      +GGN + ++  DD TR+  V F+KHKS+A  A    + DY A     ++ V RTDGGGE+ GQF    R  GIK+E TPP TP
Sbjct:   52 RLFLDLRGRMQFKSIGGNWYTLIIRDDCTRWTRVFFMKHKSDAAAAFERYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTP 148

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.180e-17
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 100
            R+++DL G      +G N + ++  D F+R+  V FLKHKS+A       + DY   KG+  ++ + RTDGGGE+ GQF    R  GIK+E TPP+TP+
Sbjct:   45 RVYLDLGGKMKTRSIGANWYTLIMRDHFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPK 142

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5KZI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.260e-17
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGL--KIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 100
            R+++DL G      +GGN + ++  DDF+R+  V FLKHKS+A       + DY   KG+  ++ V RTDGGGE+ GQF    R  G K++ TPP+TP+
Sbjct:  500 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVYVARTDGGGEFQGQFAEVCRRHGNKQKFTPPHTPK 597

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A1J3G8A6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G8A6_NOCCA)

HSP 1 Score: 82.0 bits (201), Expect = 2.090e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGLKIGVIRTDGGGEW-HGQFLSFLRELGIKRESTPPYTPQ 100
            R+  DL GP   +   G R+++L +DDF+R+  V F+K KSE  +  ++         G KI  +RTD GGE+   +FLSF R+ GIKRE T PYTPQ
Sbjct:  118 RVHSDLMGPTRTSSYSGFRYMLLFVDDFSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKQGIKREFTCPYTPQ 215

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.320e-16
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 0

Query:    4 RLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGLKIGVI--RTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ 100
            R+++DL G      +GGN + ++  DDF+R+    FLKHKS+A       + DY   KG+   V   RTDGGGE+ GQF    R  GIK E TPP+TP+
Sbjct:  193 RVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY-RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPK 290

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BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Match: A0A6L2N7P6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2N7P6_TANCI)

HSP 1 Score: 81.3 bits (199), Expect = 8.260e-16
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 0

Query:    8 DLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNALRDIINDYFAPKGLKIGVIRTDGGGEW-HGQFLSFLRELGIKRESTPPYTPQ 100
            DL GP     +GG+R+ +L IDD++R   V FLK+KSEA N  +   +      G  I VI+TD GGE+   +F++F  E GI +E T PYTPQ
Sbjct:  512 DLCGPMSVISIGGSRYFLLFIDDYSRMSWVYFLKNKSEAFNYFKKFKSYVEKQSGRNIKVIQTDRGGEFMSAEFITFCEEYGIHKELTAPYTPQ 605

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot

BLAST of mRNA_H-elongata_contig156629.3693.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JM30_9PHAE	1.210e-18	44.44	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KAM7_9PHAE	4.060e-18	43.43	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KPZ8_9PHAE	5.560e-18	43.88	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5LL52_9PHAE	7.170e-18	45.92	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JF14_9PHAE	1.040e-17	46.39	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K2Y3_9PHAE	1.180e-17	41.41	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KZI6_9PHAE	9.260e-17	42.42	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A1J3G8A6_NOCCA	2.090e-16	43.88	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6H5L1A7_9PHAE	2.320e-16	43.43	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6L2N7P6_TANCI	8.260e-16	44.68	Retrovirus-related Pol polyprotein from transposon...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 19..100 e-value: 7.6E-8 score: 32.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..100 score: 12.244
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..100 e-value: 1.4E-15 score: 59.0
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig156629	contig	H-elongata_contig156629:1170..1469 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig156629.3693.1	mRNA_H-elongata_contig156629.3693.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig156629 1170..1469 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig156629.3693.1 ID=prot_H-elongata_contig156629.3693.1|Name=mRNA_H-elongata_contig156629.3693.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
RAGRLFIDLSGPFHETYLGGNRFVMLCIDDFTRFKMVRFLKHKSEATNAL
RDIINDYFAPKGLKIGVIRTDGGGEWHGQFLSFLRELGIKRESTPPYTPQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf