prot_H-elongata_contig156363.3676.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig156363.3676.1
Unique Name	prot_H-elongata_contig156363.3676.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	103

Homology

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BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot
Match: A0A6H5K260_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K260_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.940e-15
Identity = 51/116 (43.97%), Postives = 60/116 (51.72%), Query Frame = 0

Query:    6 QVEAKVEELWQQQLAKNPLLFNATKFRLAGFSTEGDH-SGASAPTAAFEVGSEETTGSNRWGHPAGKALPRAW-----------------ARARCSPPTKVLRLQLGLTDYRTFRG 103
            +VEA +E LWQ+QLAKNPLLFN +KFRLAGFSTEG+  S A+A T A                                           +    SPPT+ LRL+LGLTDYRTFRG
Sbjct:  307 EVEANIEVLWQEQLAKNPLLFNGSKFRLAGFSTEGNRKSSATAITTATATADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPMSSSPPTRKLRLRLGLTDYRTFRG 422

[Close]

BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot
Match: D8LHN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-9
Identity = 47/121 (38.84%), Postives = 56/121 (46.28%), Query Frame = 0

Query:    4 RFQVEAKVEELWQQQ--------LAKNPLLFNATKFRLAGFSTEGDHSGASAPTAAFEVGS---EETTGSNRWGHPAGKALPRAWARARC----------SPPTKVLRLQLGLTDYRTFRG 103
            R QV   V E + ++        LAKNPLLFN +KF LAGFSTEGD   ++  TA          +TT                                SPPT+ LRL+LGLTDYRTFRG
Sbjct:   32 RDQVRVDVAEAYSRKPHPDPEALLAKNPLLFNGSKFWLAGFSTEGDRKPSATATATANPAGGAVSDTTXXXXXXXXXXXXXXXXXXXXXXXXXXSRSPTSSPPTRKLRLRLGLTDYRTFRG 152

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot

BLAST of mRNA_H-elongata_contig156363.3676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K260_9PHAE	7.940e-15	43.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LHN6_ECTSI	1.830e-9	38.84	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31835	FAMILY NOT NAMED	coord: 6..103

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig156363	contig	H-elongata_contig156363:1033..1341 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig156363.3676.1	mRNA_H-elongata_contig156363.3676.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig156363 1033..1341 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig156363.3676.1 ID=prot_H-elongata_contig156363.3676.1|Name=mRNA_H-elongata_contig156363.3676.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
LSARFQVEAKVEELWQQQLAKNPLLFNATKFRLAGFSTEGDHSGASAPTA
AFEVGSEETTGSNRWGHPAGKALPRAWARARCSPPTKVLRLQLGLTDYRT
FRG