prot_H-elongata_contig15549.3636.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15549.3636.1
Unique Nameprot_H-elongata_contig15549.3636.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length743
Homology
BLAST of mRNA_H-elongata_contig15549.3636.1 vs. uniprot
Match: D8LM78_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM78_ECTSI)

HSP 1 Score: 555 bits (1429), Expect = 1.060e-174
Identity = 393/813 (48.34%), Postives = 469/813 (57.69%), Query Frame = 0
Query:    1 LSSFIKNLAAGTHLAQYLENVGIDVSHVARSLAGLTAGDMLEGFKDKAGQVGGEARRLKTEAVRMHKELLDETGLMPLLNKTACVKEATTLASAVGSLSNTLSAAGAGGGVTNASPFHT------------------HNMDSWERGVAVSKYPTEAHRSVKKGL---GV--GARGEAEEIDEXXXIMQVLDLMEAVESLKVGIINGDGVALNTVEQAVGKVAGRIDIYLILAASESMLGFLLERLGKLPVGQAKFAGKGVECRVWNLDLKGVRVTRENVDLVMKGFRLPKRGTAVMTPFGPGKIKRYKKRSRCFVVNLDWTMSNGKPVKAYLQPNVIVVLEGHEGELSDEEGDGGGRRGTGKVTVDHSDVAVGESPVEKLTSSRPGGEPHK------------------------SSPPDNKCAQSVDAEKG-RW--LPKIWNRRRSTSVVEA------------FGDSREPERENEAVTCVRXXXXXXXXXXXXXRGDENQSMGRRTASAPALISPRRTRPRKDRKQVNESACSSPSTASAVEN-----FEGLRGKGSVASGGGGSGSGDPKIIDRGSRLTAARSDLSRGSNNA----KGLGNGGVGVEKIAEGHGDCTR--------GIMAGPTSAVEVTSAPFLVARISGVGAELKDVMWSVKQTNFPHLKTAGSLHATVSGLTIELELDSQNLPVSRERV---AGLESEGT-----------ETNGGGRPKGLRLSRLRVSVLAVKVHFGNSALSGVFNLAASAFEAAVKRHVVENVEAAVRKSLTTLLAIVNK--SEKWKILCRVGGG 718
            LSSFI  ++ GT  AQ+L+++GIDV  ++RSL+GLTAG+M+EG KD AG+VG EARRL+TEAVR+ KELLDE+G++PLLN      +AT+LA+AVG L++ LS     G    AS                       + +SWERGVAV   P E   SV+ GL   G+  G  G+ +    XXX           E LK  I+ G GV+L  VEQAVGKVA  ID+YLILAASESMLGFLLERLGKLPVG AKFAGKGVE RVWNLDL+GV V RENVDLVMKGFRLPKRGTAVMT FGPG IKRYKKRSRCFVVNLDW + +GK VKAYLQPN I +LEGHEG LSDEE       G  KVTVD S     E+    L    PGG                            S PP         AE+G RW  LP+IWNRR+S    +A             GD    ER   A                   G   ++M RRTASAP L+ P  T     ++   + +    ST    E+     F    G+    S            +    R  A  +       NA    + L +G  GV +   G G+  R        G + GP SA +V SAPFLVARISGVGAELKD+MW+VKQT+FP+L+T GSL AT+SGLTIELELD+Q LP  + +     G  S G                GG P GL+L+RLRVSVLAVKVH  N+ALS V+NLAASAFEAAVKRHVVENVEAAVRK++T+LL I+N   SEKW +LC+VGGG
Sbjct:  960 LSSFIDKVSKGTRFAQHLDHLGIDVKRLSRSLSGLTAGEMMEGVKDTAGKVGDEARRLRTEAVRVQKELLDESGILPLLNDAGGRDDATSLAAAVGLLTDALS-----GEHNTASXXXXXXXXXXXXXXXXXXXLVPQDEESWERGVAVPNDPEEEGHSVESGLRSAGIVGGGGGDLDXXXXXXXXXXXXXXXXXXERLKKSIVEG-GVSLGKVEQAVGKVAQGIDVYLILAASESMLGFLLERLGKLPVGHAKFAGKGVEARVWNLDLEGVHVKRENVDLVMKGFRLPKRGTAVMTKFGPGNIKRYKKRSRCFVVNLDWRLGSGKRVKAYLQPNDIEILEGHEGRLSDEEEVK--ESGHTKVTVDTS-----EADASTLAPEEPGGSKSXXXXXXXXXXXXXXXXXXXXXXXAPSLPPPR-------AERGGRWPSLPRIWNRRKSAGAPQAAASAELGPVGVGVGDGXXXERVVAAA--------------GKPGGSGGKTMARRTASAPVLLLPSTTGALPQQQGEGDPSARVVSTEPLGEDLCSSAFAREAGQAETTS----------SSVSSSWREAAGTTTCHPARENAPPRSRILDDGDDGVAEDGRGFGEVHRRTERINSQGPITGPNSA-DVMSAPFLVARISGVGAELKDIMWAVKQTHFPYLRTQGSLQATLSGLTIELELDTQELPAGQRKKPQGGGSGSGGAVGESDXXXXIDRGGSGGSPTGLKLTRLRVSVLAVKVHVKNNALSAVYNLAASAFEAAVKRHVVENVEAAVRKNVTSLLTIINTQLSEKWNVLCKVGGG 1727          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15549.3636.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM78_ECTSI1.060e-17448.34Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15549contigH-elongata_contig15549:1797..6387 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15549.3636.1mRNA_H-elongata_contig15549.3636.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15549 1797..6387 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15549.3636.1 ID=prot_H-elongata_contig15549.3636.1|Name=mRNA_H-elongata_contig15549.3636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=743bp
LSSFIKNLAAGTHLAQYLENVGIDVSHVARSLAGLTAGDMLEGFKDKAGQ
VGGEARRLKTEAVRMHKELLDETGLMPLLNKTACVKEATTLASAVGSLSN
TLSAAGAGGGVTNASPFHTHNMDSWERGVAVSKYPTEAHRSVKKGLGVGA
RGEAEEIDEVDVIMQVLDLMEAVESLKVGIINGDGVALNTVEQAVGKVAG
RIDIYLILAASESMLGFLLERLGKLPVGQAKFAGKGVECRVWNLDLKGVR
VTRENVDLVMKGFRLPKRGTAVMTPFGPGKIKRYKKRSRCFVVNLDWTMS
NGKPVKAYLQPNVIVVLEGHEGELSDEEGDGGGRRGTGKVTVDHSDVAVG
ESPVEKLTSSRPGGEPHKSSPPDNKCAQSVDAEKGRWLPKIWNRRRSTSV
VEAFGDSREPERENEAVTCVRVGVGCGSGSGSGSRGDENQSMGRRTASAP
ALISPRRTRPRKDRKQVNESACSSPSTASAVENFEGLRGKGSVASGGGGS
GSGDPKIIDRGSRLTAARSDLSRGSNNAKGLGNGGVGVEKIAEGHGDCTR
GIMAGPTSAVEVTSAPFLVARISGVGAELKDVMWSVKQTNFPHLKTAGSL
HATVSGLTIELELDSQNLPVSRERVAGLESEGTETNGGGRPKGLRLSRLR
VSVLAVKVHFGNSALSGVFNLAASAFEAAVKRHVVENVEAAVRKSLTTLL
AIVNKSEKWKILCRVGGGGSGSEHGSGSGAEEGGGGTDGSDGG
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