prot_H-elongata_contig155415.3630.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig155415.3630.1
Unique Nameprot_H-elongata_contig155415.3630.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length81
Homology
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BLAST of mRNA_H-elongata_contig155415.3630.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.200e-38
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 0 
Query:    2 GSLGLPTGALFSPFSRMAPPPPRIPRQPILCTSCLAYPNPFCRVDPATGGWKCSFCGKNNPCYTEDFIGSSPAEYRDSYP 81
            GSLGLPTGALF+PF+ + P P RIPRQP+LCT C AYP+PFCRVDP TG W+C FC K NPCY EDFIGSSPAE+RDS+P
Sbjct:   26 GSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKENPCYAEDFIGSSPAEHRDSFP 105
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BLAST of mRNA_H-elongata_contig155415.3630.1 vs. uniprot
Match: A0A7S4AG41_9STRA (Protein transport protein SEC23 (Fragment) n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AG41_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.600e-6
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = 0 
Query:   29 PILCTSCLAYPNPFCRVDPATGGWKCSFCGKNNPCYTEDF---------IGSSPAEYR 77
            PILCTSCLAY NP+ ++D  TG W C+ CG  N    E+          + S+  EYR
Sbjct:   32 PILCTSCLAYMNPYVQMDVGTGIWSCALCGHQNAVPVEELREGSRIATALSSACVEYR 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig155415.3630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE1.200e-3875.00Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A7S4AG41_9STRA3.600e-643.10Protein transport protein SEC23 (Fragment) n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 29..63
e-value: 1.8E-10
score: 40.7
NoneNo IPR availableGENE3D2.30.30.380coord: 26..76
e-value: 6.3E-10
score: 41.1
IPR037364Protein transport protein Sec23PANTHERPTHR11141PROTEIN TRANSPORT PROTEIN SEC23coord: 4..64
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 19..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig155415contigH-elongata_contig155415:883..1125 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig155415.3630.1mRNA_H-elongata_contig155415.3630.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig155415 883..1125 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig155415.3630.1 ID=prot_H-elongata_contig155415.3630.1|Name=mRNA_H-elongata_contig155415.3630.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
VGSLGLPTGALFSPFSRMAPPPPRIPRQPILCTSCLAYPNPFCRVDPATG
GWKCSFCGKNNPCYTEDFIGSSPAEYRDSYP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006895Znf_Sec23_Sec24
IPR037364Sec23
IPR036174Znf_Sec23_Sec24_sf